New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4679619	39 (0.650)	4 (0.070)	4/248	NT	9.3%	coding (338/447 nt)	rnhA	ribonuclease H
	?	NC_002947	= 4679643	41 (0.720)					coding (314/447 nt)	rnhA	ribonuclease H

CTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACC  >  NC_002947/4679473‑4679765                                                                                                                                                   |                                                                                                                                                    cTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCgg                                                                                                                                                   <  6:380969/149‑1 (MQ=255)    gCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGt                                                                                                                                                  <  2:236837/147‑1 (MQ=255)         cGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcga                                                                                                                                           >  7:8545‑M1/1‑139 (MQ=255)         cGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTg                                                                                                                                           <  5:140065/149‑1 (MQ=255)          gTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGAACCCAATTCCAGGTTACCTTGTGGCGGTTGACCTGc                                                                                                                                          >  6:175384/1‑149 (MQ=255)             aCAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑c                                                                                                                                       <  1:196451/148‑1 (MQ=255)              cAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑Ca                                                                                                                                      <  2:30596/148‑1 (MQ=255)               aaaGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATc                                                                                                                                    >  2:130185/1‑149 (MQ=255)                   gCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTTGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAgc                                                                                                                                <  5:50100/149‑1 (MQ=255)                      gcgATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAgctgc                                                                                                                             >  1:203516/1‑149 (MQ=255)                         aTTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTgc                                                                                                                          >  1:130185‑M2/1‑147 (MQ=255)                              gcgccagcTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGTCCTGCT‑CATCGAGCTGCTgccac                                                                                                                       <  6:117854‑M2/144‑6 (MQ=255)                               ccccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgagcaggtcaaccgccacaag                                                                                                                     <  8:332434‑M1/149‑33 (MQ=255)                               ccccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgagcaggtcaaccgccacaa                                                                                                                      <  8:8545‑M1/148‑32 (MQ=255)                               ccccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTgccacaag                                                                                                                    <  5:267584‑M2/149‑9 (MQ=255)                                cccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGt                                                                                                                   >  2:207084/1‑149 (MQ=255)                                cccAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGt                                                                                                                   >  3:315104/1‑149 (MQ=255)                                     cTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCagcagctcgatgagcaggtcaaccgccacaaggtaacc                                                                                                               <  4:231469‑M1/149‑39 (MQ=255)                                        aaCGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGttc                                                                                                           <  1:207084/149‑1 (MQ=255)                                          cGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGttctt                                                                                                         >  8:115911/1‑149 (MQ=255)                                              gggCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCAcc                                                                                                     >  1:196530/1‑149 (MQ=255)                                                      aCCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCtt                                                                                             >  6:123326/1‑149 (MQ=255)                                                         tCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATCGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTggc                                                                                          >  7:28497/1‑149 (MQ=255)                                                          cATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGATCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTggcg                                                                                         >  8:266162/1‑149 (MQ=255)                                                            tCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTggcggc                                                                                       >  4:234975/1‑149 (MQ=255)                                                            tCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTggaca                                                                                        >  6:374148/1‑145 (MQ=255)                                                                 cccACGGTTGGCCAGCTGGTCGGTGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAgctgct                                                                                                                            <  4:68473/107‑1 (MQ=255)                                                                 cccACGGTTGGCCAGCTGGTCGGTGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAgctgct                                                                                                                            >  3:68473/1‑107 (MQ=255)                                                                   cACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTTTTCACCGGCTCCTTGGCGGCGGTCTTc                                                                                >  4:267900/1‑149 (MQ=255)                                                                    aCGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTc                                                                                >  1:78525/1‑148 (MQ=255)                                                                            ccAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGc                                                                       >  7:169947/1‑149 (MQ=255)                                                                                   gTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCttcttc                                                                 >  6:220704/1‑148 (MQ=255)                                                                                         gcgTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGa                                                          <  5:123326/149‑1 (MQ=255)                                                                                               gttGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGAccatc                                                     <  2:196530/148‑1 (MQ=255)                                                                                                ttGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGAccatcca                                                   >  2:178599/1‑149 (MQ=255)                                                                                                    cGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCg                                               >  8:850/1‑149 (MQ=255)                                                                                                     ggggTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGt                                              <  7:115911/149‑1 (MQ=255)                                                                                                      gggTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGTCCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGtt                                             <  5:117854/149‑1 (MQ=255)                                                                                                            ccAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGcc                                       <  2:78525/149‑1 (MQ=255)                                                                                                              aaTATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCt                                     <  7:266162/149‑1 (MQ=255)                                                                                                                tatGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCTGAATCGACCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCt                                     >  1:88487/1‑148 (MQ=255)                                                                                                                            cccACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGc                       <  6:267584/149‑1 (MQ=255)                                                                                                                             ccACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGc                       >  6:45391/1‑148 (MQ=255)                                                                                                                                   ccAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCCTTCGTTGATCCCCTTCATCACGTACTGCGAGTCgg                >  2:242587/1‑149 (MQ=255)                                                                                                                                   ccAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCgg                >  6:298188/1‑149 (MQ=255)                                                                                                                                     aGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtg              <  8:28497/149‑1 (MQ=255)                                                                                                                                      ggTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgag             <  4:231469‑M2/149‑112 (MQ=255)                                                                                                                                       gTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtggt            <  1:178599/149‑1 (MQ=255)                                                                                                                                       gTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCggtggt            >  8:40050/1‑149 (MQ=255)                                                                                                                                            cTTGTGGCagcagctcgatgagcaggtcaaccgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg        <  5:267584‑M1/149‑142 (MQ=255)                                                                                                                                            cTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg       <  8:332434‑M2/149‑118 (MQ=255)                                                                                                                                             ttGTGGCGGTTGACCTGCT‑CATCGAGCTGCTgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctgggg       <  8:8545‑M2/148‑118 (MQ=255)                                                                                                                                               gtgGCagcagctcgatgagcaggacaaccgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctggcgc       <  6:117854‑M1/147‑143 (MQ=255)                                                                                                                                                tgGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGcacca    <  2:203516/148‑1 (MQ=255)                                                                                                                                                  gcagcagctcgatgagcaggtcaaccgccacaaggtaacctggaagtgggtgcgcggccatattggccaccccggcaacgaacgcgccgaccagctggccaaccgtggggtcgatgaggtgcgcgcccagcgttgagctggggtacaat  >  1:130185‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTTGCATCCGTTACAAAGGCCGCGATTGTACCCCAGCTCAACGCTGGGCGCGCACCTCATCGACCCCACGGTTGGCCAGCTGGTCGGCGCGTTCGTTGCCGGGGTGGCCAATATGGCCGCGCACCCACTTCCAGGTTACCTTGTGGCGGTTGACCTGCT‑CATCGAGCTGCTGCCACAAGTCAGCGTTCTTCACCGGCTCCTTGGCGGCGGTCTTCCAGCCACGCTTCTTCCAGTTGACCATCCATTCGTTGATGCCCTTCATCACGTACTGCGAGTCGGTGGTCAGCACCACC  >  NC_002947/4679473‑4679765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.