New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4840482	47 (0.780)	3 (0.050)	3/252	NT	5.9%	coding (848/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4840522	50 (0.870)					coding (888/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1

TTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4840367‑4840482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCA  <  NC_002947/4840522‑4840473                                                                                                                                                                        TTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCCGACAGGGTCATCATGCCGTTGATCATGCCGCC                   >  8:27823/1‑149                ACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAG    <  7:27823/149‑1                  CCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACAACGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCCGACAGGGTCATCATGCCGTTTATCATGCCGCCCCAGCTTGGCGCCAGCA  <  3:282327/149‑1                                                                                                                                                                        TTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4840367‑4840482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccCGACAGGGTCATCATGCCGTTGATCATGCCGCCCCAGCTTGGCGCCAGCA  <  NC_002947/4840522‑4840473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.