New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4840482	47 (0.780)	3 (0.050)	3/252	NT	5.9%	coding (848/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4840522	50 (0.870)					coding (888/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1

CACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGTCGCACTACACCGACTGGAC  >  NC_002947/4840381‑4840662                                                                                                                                               |                                                                                                                                             cACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCt                                                                                                                                       >  4:32157/1‑149 (MQ=255)           aTCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACt                                                                                                                             >  1:318974/1‑149 (MQ=255)           aTCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACt                                                                                                                             >  6:252529/1‑149 (MQ=255)                 gccggccCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCAc                                                                                                                       >  5:176841/1‑149 (MQ=255)                     gccCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGAc                                                                                                                   <  4:241599/149‑1 (MQ=255)                      cccGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGAcc                                                                                                                  <  5:254675/149‑1 (MQ=255)                           aTCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATc                                                                                                             >  6:198362/1‑149 (MQ=255)                                cTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGa                                                                                                                    >  1:44821/1‑137 (MQ=255)                                cTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGa                                                                                                                    <  2:44821/137‑1 (MQ=255)                                      tACACCGCCCTGCCTGACTGGGCGCAATCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCt                                                                                                  >  5:235718/1‑149 (MQ=255)                                         acCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGCCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACAGACCCGATCCTGCGCTTCCtggt                                                                                               >  6:11644/1‑149 (MQ=255)                                                   ctgACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                                                     <  8:300819/149‑1 (MQ=255)                                                   ctgACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                                                     >  7:252464/1‑149 (MQ=255)                                                    tgACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTgg                                                                                    >  5:18832/1‑149 (MQ=255)                                                       cTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGt                                                                                 <  6:176841/149‑1 (MQ=255)                                                        tGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                                                     >  5:28771/1‑144 (MQ=255)                                                        tGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                                                     <  6:28771/144‑1 (MQ=255)                                                        tGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGtt                                                                                >  5:77080/1‑149 (MQ=255)                                                          ggCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGtt                                                                                <  6:7950/147‑1 (MQ=255)                                                             gcAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACg                                                                           >  5:26445/1‑149 (MQ=255)                                                              cAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGAGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACgg                                                                          >  1:366849/1‑149 (MQ=255)                                                               aGTCGCTTGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGc                                                                         <  8:208953/149‑1 (MQ=255)                                                                   gCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGt                                                                     >  5:350562/1‑149 (MQ=255)                                                                    cTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTc                                                                    >  6:191123/1‑149 (MQ=255)                                                                         cATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCt                                                               >  3:86789/1‑149 (MQ=255)                                                                           tGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTc                                                             <  6:282822/149‑1 (MQ=255)                                                                           tGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTc                                                             <  4:86789/149‑1 (MQ=255)                                                                             gTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCg                                                            <  3:32157/148‑1 (MQ=255)                                                                              tAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGaa                                                          <  6:350562/149‑1 (MQ=255)                                                                              tAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGaa                                                          <  5:252529/149‑1 (MQ=255)                                                                                 tGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGc                                                       >  3:75615/1‑149 (MQ=255)                                                                                   ttcttcatcCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGccc                                                     <  3:123936/145‑1 (MQ=255)                                                                                   tCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGcc                                                      <  2:318974/148‑1 (MQ=255)                                                                                     gATCATCCTGCTGGCGCCAAGCTGGGGCGGGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGc                                                                                   >  1:22746/1‑118 (MQ=255)                                                                                     gATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGc                                                                                   <  2:22746/117‑1 (MQ=255)                                                                                     gATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCga                                                   >  7:70517/1‑149 (MQ=40)                                                                                        catcCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGccc                                                     >  4:123936/1‑144 (MQ=38)                                                                                          tcCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGatgatg                                              <  8:252464/149‑1 (MQ=37)                                                                                             tgctgGCGCCAAGCTGGGGC‑GGCATGATAAACGGCATGATGACCCTGTCGggcgccagcaggatgatcgacattaccatgcccagcgactgcgcccagtcaggcagggcgttgtagtgcaggtgatgcgggccggcccagatgtacagg                                           <  3:282327‑M2/149‑100 (MQ=255)                                                                                               ctgGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGggcgccagcaggatgatcgacattaccatgcccagcgactgcgcccagtcaggcagggcggtgtagtgcaggtgatgcgggccggcccagatgtacagggt                                         <  7:27823‑M2/149‑102 (MQ=255)                                                                                               ctgGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGcc                                           <  3:358992/147‑1 (MQ=37)                                                                                                    gcCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCTTCAAGa                                    >  4:75731/1‑149 (MQ=37)                                                                                                        aGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGt                                <  5:11644/149‑1 (MQ=39)                                                                                                             gggC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGaa                             <  6:235718/147‑1 (MQ=255)                                                                                                              ggc‑ggcATGATCAACGGCATGATGACCCTGTCGggcgccagcaggatgatcgacattaccatgcccagcgactgcgcccagtcaggcagggcggtgtagtgcaggtgatgcgggccggcccagatgtacagggtgatcagcgcccagaa                          >  8:27823‑M2/1‑33 (MQ=255)                                                                                                                c‑ggcATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCAc                        <  5:198362/149‑1 (MQ=255)                                                                                                                   gcATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTg                      >  4:210990/1‑149 (MQ=255)                                                                                                                    cATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGt                     <  4:75615/149‑1 (MQ=255)                                                                                                                      tGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGTCg                   <  6:77080/149‑1 (MQ=255)                                                                                                                         tCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGTCGCAc                <  2:366849/149‑1 (MQ=255)                                                                                                                            aCGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCAGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGACCTCACTGGCGCACTac             >  8:153378/1‑149 (MQ=255)                                                                                                                              ggCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGTCGCACTacac           <  6:26445/149‑1 (MQ=255)                                                                                                                                        cccTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGTCGCACTACACCGACTGGAc  >  5:98680/1‑148 (MQ=255)                                                                                                                                        cccTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTATACGGCATGTCCACCTTCGAAGGCCCGATGATGGCAATCAAGACCGTGAACTCACTGTCGCACTACACCGACTGGAc  >  4:274212/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                             CACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGACCGTGAACTCACTGTCGCACTACACCGACTGGAC  >  NC_002947/4840381‑4840662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.