New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4840482	47 (0.780)	3 (0.050)	3/252	NT	5.9%	coding (848/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1
	?	NC_002947	= 4840522	50 (0.870)					coding (888/1443 nt)	ccoN‑II	cbb3‑type cytochrome c oxidase subunit 1

ACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGA  >  NC_002947/4840365‑4840628                                                                                                                      |                                                                                                                                                    aCTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCatgat                                                                                                                      >  8:131966/1‑148 (MQ=255)   ttCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCcgacagggtcatcatgccgttgatcatgccgcc                                                                                                                    >  8:27823‑M1/1‑116 (MQ=255)   ttCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGAc                                                                                                                   >  3:241599/1‑149 (MQ=255)                 cACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCt                                                                                                     >  4:32157/1‑149 (MQ=255)                  aCCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCcgacagggtcatcatgccgttgatcatgccgccccagcttggcgccag                                                                                                     <  7:27823‑M1/149‑49 (MQ=255)                    ccTGTACATCTGGGCCGGCCCGCATCACCTGCACTACAACGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCcgacagggtcatcatgccgtttatcatgccgccccagcttggcgccagca                                                                                                   <  3:282327‑M1/149‑51 (MQ=255)                      tGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATc                                                                                                                                 <  8:280222/116‑1 (MQ=255)                      tGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATc                                                                                                                                 >  7:280222/1‑116 (MQ=255)                        tACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGAcc                                                                                                                  >  5:252925/1‑129 (MQ=255)                        tACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGAcc                                                                                                                  <  6:252925/129‑1 (MQ=255)                           aTCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACt                                                                                           >  1:318974/1‑149 (MQ=255)                           aTCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACt                                                                                           >  6:252529/1‑149 (MQ=255)                                 gccggccCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCAc                                                                                     >  5:176841/1‑149 (MQ=255)                                     gccCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGAc                                                                                 <  4:241599/149‑1 (MQ=255)                                      cccGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGAcc                                                                                <  5:254675/149‑1 (MQ=255)                                           aTCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATc                                                                           >  6:198362/1‑149 (MQ=255)                                                cTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGa                                                                                  <  2:44821/137‑1 (MQ=255)                                                cTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGa                                                                                  >  1:44821/1‑137 (MQ=255)                                                      tACACCGCCCTGCCTGACTGGGCGCAATCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCt                                                                >  5:235718/1‑149 (MQ=255)                                                         acCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGggc‑ggc                                                                                                                                       >  6:65628/1‑75 (MQ=255)                                                         acCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGggc‑ggc                                                                                                                                       <  5:65628/75‑1 (MQ=255)                                                         acCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGCCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACAGACCCGATCCTGCGCTTCCtggt                                                             >  6:11644/1‑149 (MQ=255)                                                                   ctgACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                   >  7:252464/1‑149 (MQ=255)                                                                   ctgACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                   <  8:300819/149‑1 (MQ=255)                                                                    tgACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTgg                                                  >  5:18832/1‑149 (MQ=255)                                                                       cTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGt                                               <  6:176841/149‑1 (MQ=255)                                                                        tGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                   <  6:28771/144‑1 (MQ=255)                                                                        tGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTg                                                   >  5:28771/1‑144 (MQ=255)                                                                        tGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGtt                                              >  5:77080/1‑149 (MQ=255)                                                                          ggCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGtt                                              <  6:7950/147‑1 (MQ=255)                                                                             gcAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACg                                         >  5:26445/1‑149 (MQ=255)                                                                              cAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGAGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACgg                                        >  1:366849/1‑149 (MQ=255)                                                                               aGTCGCTTGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGc                                       <  8:208953/149‑1 (MQ=255)                                                                                   gCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGt                                   >  5:350562/1‑149 (MQ=255)                                                                                    cTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTc                                  >  6:191123/1‑149 (MQ=255)                                                                                         cATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCt                             >  3:86789/1‑149 (MQ=255)                                                                                           tGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTc                           <  4:86789/149‑1 (MQ=255)                                                                                           tGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTc                           <  6:282822/149‑1 (MQ=255)                                                                                             gTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCg                          <  3:32157/148‑1 (MQ=255)                                                                                              tAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGaa                        <  5:252529/149‑1 (MQ=255)                                                                                              tAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGaa                        <  6:350562/149‑1 (MQ=255)                                                                                                 tGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGc                     >  3:75615/1‑149 (MQ=255)                                                                                                   ttcttcatcCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGccc                   <  3:123936/145‑1 (MQ=255)                                                                                                   tCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGcc                    <  2:318974/148‑1 (MQ=255)                                                                                                     gATCATCCTGCTGGCGCCAAGCTGGGGCGGGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGc                                                 >  1:22746/1‑118 (MQ=255)                                                                                                     gATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGc                                                 <  2:22746/117‑1 (MQ=255)                                                                                                     gATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCga                 >  7:70517/1‑149 (MQ=40)                                                                                                        catcCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGccc                   >  4:123936/1‑144 (MQ=38)                                                                                                          tcCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGatgatg            <  8:252464/149‑1 (MQ=37)                                                                                                             tgctgGCGCCAAGCTGGGGC‑GGCATGATAAACGGCATGATGACCCTGTCGggcgccagcaggatgatcgacattaccatgcccagcgactgcgcccagtcaggcagggcgttgtagtgcaggtgatgcgggccggcccagatgtacagg         <  3:282327‑M2/149‑100 (MQ=255)                                                                                                               ctgGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGggcgccagcaggatgatcgacattaccatgcccagcgactgcgcccagtcaggcagggcggtgtagtgcaggtgatgcgggccggcccagatgtacagggt       <  7:27823‑M2/149‑102 (MQ=255)                                                                                                               ctgGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGcc         <  3:358992/147‑1 (MQ=37)                                                                                                                    gcCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCTTCAAGa  >  4:75731/1‑149 (MQ=37)                                                                                                                      |                                                                                                                                                    ACTTCTGGGCGCTGATCACCCTGTACATCTGGGCCGGCCCGCATCACCTGCACTACACCGCCCTGCCTGACTGGGCGCAGTCGCTGGGCATGGTAATGTCGATCATCCTGCTGGCGCCAAGCTGGGGC‑GGCATGATCAACGGCATGATGACCCTGTCGGGCGCCTGGCACAAACTGCGCACCGACCCGATCCTGCGCTTCCTGGTGGTGTCGCTGGCGTTCTACGGCATGTCCACCTTCGAAGGCCCGATGATGGCCATCAAGA  >  NC_002947/4840365‑4840628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.