New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4950413 =	43 (0.710)	4 (0.070)	4/248	NT	9.4%	coding (438/498 nt)	fliL	flagellar protein FliL
	?	NC_002947	4950455 =	37 (0.650)					coding (396/498 nt)	fliL	flagellar protein FliL

GCCGACCTGGATGCCCTCAAGGTGCACATGCCGGTGATCCGCAACAACCTGGTGATGATGTTCTCCGGGCAAGGGTTCGACACCCTCGCCAGCAGCCCGGTAGGGCAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4950568‑4950413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCT  >  NC_002947/4950455‑4950600                                                                                                                                                                                                                                                                                                                GCCGACCTGGATGCCCTCAAGGTGCACATGCCGGTGATCCGCAACAACCTGGTGATGATGTTCTCCGGGCAAGGGTTCGACACCCTCGCCAGCAGCCCGGTAGGGCAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGT                                                                                                                                                           >  8:23188/1‑149   CGACCTGGATGCCCTCAAGGTGCACATGCCGGTGATCCGCAACAACCTGGTGATGATGTTCTCCGGGCAAGGGTTCGACACCCTCGCCAGCAGCCCGGTAGGGCAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGG                                                                                                                                                         <  5:248213/149‑1    GACCTGGATGCCCTCAAGGTGCACATGCCGGTGATCCGCAACAACCTGGTGATGATGTTCTCCGGGCAAGGGTTCGACACCCTCGCCAGCAGCCCGGTAGGGCAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGC                                                                                                                                                        <  2:157660/149‑1     ACCTGGATGCCCTCAAGGTGCACATGCCGGTGATCCGCAACAACCTGGTGATGATGTTCTCCGGGCAAGGGTTCGACACCCTCGCCAGCAGCCCGGTAGGGCAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGCG                                                                                                                                                       <  8:355377/149‑1          GATGCCCTCAAGGTGCAAATGCCGGTGATCCGCAACAACCTCGTGATGATGTTCTCCGGGCAAGGGTTCGACACACTCGCCAGCAGCCCGGTAGGGAAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGCGCAG                                                                                                                                                    >  7:33417/1‑147                                                                                                                 TGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCAT                                                             <  5:876/131‑1                                                                                                                 TGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCAT                                                             >  6:876/1‑131                                                                                                                    TGCGCCAGAAGGCCACCGCGGTGGTCCAGGTAGTGGCGCAGAATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATGATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAG                                                 <  6:213454/140‑1                                                                                                                    TGCGCCAGAAGGCCACCGCGGTGCTCCAGGAAGTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCTAACACTTGCCCGGAGAACATCATCCCCAGGTTGTTCCGGATCACCCGAAAGAGCACCTTTAG                                                 >  5:213454/1‑140                                                                                                                                                     TGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACT       >  8:112008/1‑149                                                                                                                                                       GCGCAGCATCTCCTGCCCTACCAGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCA     >  2:116421/1‑149                                                                                                                                                          CAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCT  <  4:83866/149‑1                                                                                                                                                          CAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCT  >  7:69413/1‑149                                                                                                                                                                                                                                                                                                                GCCGACCTGGATGCCCTCAAGGTGCACATGCCGGTGATCCGCAACAACCTGGTGATGATGTTCTCCGGGCAAGGGTTCGACACCCTCGCCAGCAGCCCGGTAGGGCAGGAGATGCTGCGCCAGAAGGCCACCGCGGTGGTCCAGGAAGTGGCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4950568‑4950413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCT  >  NC_002947/4950455‑4950600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.