New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4950413 =	43 (0.710)	4 (0.070)	4/248	NT	9.4%	coding (438/498 nt)	fliL	flagellar protein FliL
	?	NC_002947	4950455 =	37 (0.650)					coding (396/498 nt)	fliL	flagellar protein FliL

TGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCT  >  NC_002947/4950318‑4950600                                                                                                                                          |                                                                                                                                                  tGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGccc                                                                                                                                        >  7:288114/1‑149 (MQ=255)   ggACAGCAGGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTa                                                                                                                                      >  3:83866/1‑149 (MQ=255)     aCAGCAGGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTAcc                                                                                                                                    >  1:138165/1‑149 (MQ=255)       agcagGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCgg                                                                                                                                  >  2:194833/1‑149 (MQ=255)        gcagGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCggg                                                                                                                                 <  4:78534/149‑1 (MQ=255)         cagGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCg                                                                                                                                   >  6:230559/1‑146 (MQ=255)         cagGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCg                                                                                                                                   <  5:230559/146‑1 (MQ=255)         atgccggtgatccgcaacaacctggtgatgatgttctccgggcaagggttcgacaccctcgccagcagcccggtagggcaggagatgCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCgcagca                                                                                                                                                  <  5:876‑M1/44‑1 (MQ=255)         atgccggtgatccgcaacaacctggtgatgatgttctccgggcaagggttcgacaccctcgccagcagcccggtagggcaggagatgCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCgcagca                                                                                                                                                  >  6:876‑M1/88‑131 (MQ=255)               cTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGCCCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACAACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGTGCTGCTgg                                                                                                                          >  7:142325/1‑149 (MQ=255)                    cGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAgg                                                                                                                     <  3:273835/149‑1 (MQ=255)                       ccATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGgtg                                                                                                                  >  7:23188/1‑149 (MQ=255)                        cATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGgtgt                                                                                                                 >  3:141671/1‑149 (MQ=255)                        cATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGgtgt                                                                                                                 >  2:36733/1‑149 (MQ=255)                           tGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCg                                                                                                               >  6:859/1‑148 (MQ=255)                             cGGACACCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACAGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGCCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAAc                                                                                                            >  8:33417/1‑149 (MQ=255)                              ggACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAAcc                                                                                                           <  3:301092/149‑1 (MQ=255)                                  tCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGc                                                                                                                         >  5:245020/1‑131 (MQ=255)                                  tCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGc                                                                                                                         <  6:245020/131‑1 (MQ=255)                                  tCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTg                                                                                                       >  6:125121/1‑149 (MQ=255)                                    cTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGc                                                                                                      <  8:288114/148‑1 (MQ=255)                                       cTGCAATACGAAATTGGTGAACTGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCgg                                                                                                  <  7:91268/149‑1 (MQ=255)                                       cTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGccc                                                                                                    <  7:297442/147‑1 (MQ=255)                                             tACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAAca                                                                                            >  7:246574/1‑149 (MQ=255)                                             tACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAAca                                                                                            <  5:859/149‑1 (MQ=255)                                               cGAAATTGGTGACCAGCAACTGGGCGACGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAAcatc                                                                                          <  5:111574/149‑1 (MQ=255)                                               cGAAATTGGTGAACATCAACTGGGCGCTGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAAcat                                                                                           <  8:142325/148‑1 (MQ=255)                                                   aTTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACAtcatca                                                                                      <  1:22857/149‑1 (MQ=255)                                                        tGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAgg                                                                                 <  2:215219/149‑1 (MQ=255)                                                            cAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGgttg                                                                              >  8:227996/1‑148 (MQ=255)                                                            cAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGgttg                                                                              <  7:227996/148‑1 (MQ=255)                                                              gCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGttgttg                                                                           <  8:246574/149‑1 (MQ=255)                                                                  tcgatCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGGGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGa                                                                       <  4:33821/145‑1 (MQ=255)                                                                         aTGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGTGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCgg                                                                <  4:141671/149‑1 (MQ=255)                                                                              cGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCAtgt                                                           <  1:36733/149‑1 (MQ=255)                                                                                          ttccttcTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAggg                                               >  6:320311/1‑149 (MQ=255)                                                                                              tgctgcgccagaaggccaccgcggtggtccaggaagtggcgcagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCAt                                                             >  6:876‑M2/45‑131 (MQ=255)                                                                                              tgctgcgccagaaggccaccgcggtggtccaggaagtggcgcagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCAt                                                             <  5:876‑M2/87‑1 (MQ=255)                                                                                                CTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTTCCCTACCGGGCTGCTGGCGAGTGTGTCGAACCCTTGCCCGGAGAACATCATCACGAGGTTGTTGCGGATCACCGGCATTTGCACCTTGAGGGCATc                                           >  7:33417‑M1/1‑147 (MQ=255)                                                                                                 tgcgccagaaggccaccgcggtggtccaggtagtggcgcagAATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATGATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAg                                                 <  6:213454‑M2/99‑1 (MQ=255)                                                                                                 tgcgccagaaggccaccgcggtgctccaggaagtggcgcagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCTAACACTTGCCCGGAGAACATCATCCCCAGGTTGTTCCGGATCACCCGAAAGAGCACCTTTAg                                                 >  5:213454‑M2/42‑140 (MQ=255)                                                                                                   CGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGt                                      <  8:355377‑M1/149‑1 (MQ=255)                                                                                                    GCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTc                                     <  2:157660‑M1/149‑1 (MQ=255)                                                                                                     CCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCg                                    <  5:248213‑M1/149‑1 (MQ=255)                                                                                                       ACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGc                                  >  8:23188‑M1/1‑149 (MQ=255)                                                                                                         ttCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCt                                >  4:112254/1‑149 (MQ=255)                                                                                                                          tGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAgg               <  2:138165/149‑1 (MQ=255)                                                                                                                            gCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGt             <  5:320311/149‑1 (MQ=255)                                                                                                                             ccTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGt             >  5:336894/1‑148 (MQ=255)                                                                                                                               ttCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGa           >  4:197826/1‑148 (MQ=255)                                                                                                                                  tggcgcagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACt       >  8:112008‑M2/9‑149 (MQ=255)                                                                                                                                    gcgcagCATCTCCTGCCCTACCAGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCa     >  2:116421‑M2/7‑149 (MQ=255)                                                                                                                                       cagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCt  >  7:69413‑M2/4‑149 (MQ=255)                                                                                                                                       cagCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCt  <  4:83866‑M2/146‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                  TGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCCTACTGCAATACGAAATTGGTGAACAGCAACTGGTCGATGACCGGCTTGCCGACTTCCTTCTGCGCCACTTCCTGGACCACCGCGGTGGCCTTCTGGCGCAGCATCTCCTGCCCTACCGGGCTGCTGGCGAGGGTGTCGAACCCTTGCCCGGAGAACATCATCACCAGGTTGTTGCGGATCACCGGCATGTGCACCTTGAGGGCATCCAGGTCGGCCTGGTTACGCGCCTGTAGGGTGATACTCAGCT  >  NC_002947/4950318‑4950600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.