New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5004605 =	52 (0.860)	3 (0.050)	3/248	NT	6.1%	coding (957/3300 nt)	PP_4410	hypothetical protein
	?	NC_002947	5004651 =	44 (0.780)					coding (1003/3300 nt)	PP_4410	hypothetical protein

TGAATTTCGCAGGTGTTGAGGGGTACTTAAACTTCGACAGGGGGTTTTGAAAGATCCAAAGGGGTAGATATATAAATAAGTATATATTGATTTTCCCGATTGCCATTCTGCGTGCTTTTAATTTTTCAACTGGTTGATGCCTCAAATAAGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5004759‑5004605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcacgcAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCG  >  NC_002947/5004651‑5004752                                                                                                                                                                                                                                                                   ttAATTTCGCAGGTGTTTAGGGGTACTTAAACTTCGACAGGGGGTTTTGTAAGATCCAAAGGGGTAGATTTATAAATAAGTATATATTGATTTTCCCGATTGCCATTCTGCGTGCTTTTAATTTTTCAACTGGTTGATGCCTCAAATAA                                                                                                              <  1:138970/147‑1     TTTCGCAGGTGTTGAGGGGTACTTAAACTTCGACAGGGGGTTTTGAAAGATCCAAAGGGGTAGATATATAAATAAGTATATATTGATTTTCCCGATTGCCATTCTGCGTGCTTTTAATTTTTCAAATGGTTGATGCCTCAAATAAGCAC                                                                                                          >  3:301924/1‑149                                                                                                        CATTCTGCGTGCTTTTAATTTTTCAACTGGTTGATGCCTCAAATAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACAC       >  3:219749/1‑149                                                                                                            CTGCGTGCTTTTAATTTTTCAACTGGTTGATGCCTCAAATAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTG    <  4:219749/148‑1                                                                                                              GCGTGCTTTTAATTTTTCAACTGGTTGATGCCTCAAATAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCG  >  4:125630/1‑148                                                                                                                                                                                                                                                                   TGAATTTCGCAGGTGTTGAGGGGTACTTAAACTTCGACAGGGGGTTTTGAAAGATCCAAAGGGGTAGATATATAAATAAGTATATATTGATTTTCCCGATTGCCATTCTGCGTGCTTTTAATTTTTCAACTGGTTGATGCCTCAAATAAGCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5004759‑5004605 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcacgcAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCG  >  NC_002947/5004651‑5004752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.