New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5004605 =	52 (0.860)	3 (0.050)	3/248	NT	6.1%	coding (957/3300 nt)	PP_4410	hypothetical protein
	?	NC_002947	5004651 =	44 (0.780)					coding (1003/3300 nt)	PP_4410	hypothetical protein

AGGTAGCTCTAGGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTG  >  NC_002947/5004460‑5004750                                                                                                                                                  |                                                                                                                                                  agGTAGCTCTAGCAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATACCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGt                                                                                                                                                <  8:187770/149‑1 (MQ=255)   gTAGCTCTAGGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGc                                                                                                                                              <  6:95915/149‑1 (MQ=255)        tctAGGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGAGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTAtt                                                                                                                                         >  5:116742/1‑149 (MQ=255)           aGGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTAttt                                                                                                                                        >  2:248753/1‑147 (MQ=255)            gtaaTCGTTATATATCGCAAATATGTAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAg                                                                                                                                     <  2:368255/147‑1 (MQ=255)                      gATATCGCAAATATGCAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCa                                                                                                                           <  1:318842/149‑1 (MQ=255)                                atatGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAAt                                                                                                                 >  6:39597/1‑149 (MQ=255)                                            cgcaggtgttgaggggtacttaaacttcgacagggggttttgaaagatccaaaggggtagatatataaataagtatatattgattttcccgattgccattctGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGc                                                                                                      >  4:125630‑M1/103‑148 (MQ=255)                                            cagcCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCa                                                                                                     <  1:248753/149‑1 (MQ=255)                                             agcCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTaaagcaacg                                                                                                       >  1:132234/1‑140 (MQ=255)                                              caggtgttgaggggtacttaaacttcgacagggggttttgaaagatccaaaggggtagatatataaataagtatatattgattttcccgattgccattctGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAg                                                                                                    <  4:219749‑M1/48‑1 (MQ=255)                                                cTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAAt                                                                                                 <  1:19088/149‑1 (MQ=255)                                                 tttCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATc                                                                                                                                <  2:33792/117‑1 (MQ=255)                                                 gtgttgaggggtacttaaacttcgacagggggttttgaaagatccaaaggggtagatatataaataagtatatattgattttcccgattgccattctGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATg                                                                                                >  3:219749‑M1/98‑149 (MQ=255)                                                   tCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATgg                                                                                               <  7:144142/148‑1 (MQ=255)                                                   tCATCCGAAAGTATACCCGACTATAGGCTTGACATTCACATTCATCAAGGTCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATgg                                                                                               <  8:139326/148‑1 (MQ=255)                                                       gCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATc                                                                                          >  1:340372/1‑149 (MQ=255)                                                           aaGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCggg                                                                                       >  7:221881/1‑148 (MQ=255)                                                              tataGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGaaaa                                                                                   >  6:52848/1‑149 (MQ=255)                                                                  gCCGACTATAGGCTTGACATTCACATTCCTCACGGGCTGGAAATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTGATTTGAGGCATCAACCAGTTCAAAAATTAAAAGCGCGACGAATGGCAATCGGTAAAATCa                                                                                >  7:68298/1‑148 (MQ=255)                                                                  gCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               >  5:74046/1‑149 (MQ=255)                                                                      aCTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAg                                                                                                                          >  4:277048/1‑102 (MQ=255)                                                                       cTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATAATCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAatatat                                                                          <  6:311321/149‑1 (MQ=255)                                                                           aGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGaaaa                                                                                                                   >  5:263088/1‑104 (MQ=255)                                                                           aGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGaaaa                                                                                                                   <  6:263088/104‑1 (MQ=255)                                                                            ggCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATAc                                                                        >  5:118906/1‑146 (MQ=255)                                                                            ggCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATAc                                                                        <  6:118906/146‑1 (MQ=255)                                                                             gCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               <  5:219154/138‑1 (MQ=255)                                                                             gCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               >  6:219154/1‑138 (MQ=255)                                                                              cTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATTGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttatt                                                                   <  5:246222/149‑1 (MQ=255)                                                                              cTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttatt                                                                   <  5:251589/149‑1 (MQ=255)                                                                               ttGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttattt                                                                  >  6:61129/1‑149 (MQ=255)                                                                                 gACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttattta                                                                 <  3:93243/148‑1 (MQ=255)                                                                                         cattcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTAc                                                        <  8:102914/149‑1 (MQ=255)                                                                                         cattcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTAc                                                        <  5:52848/149‑1 (MQ=255)                                                                                          attcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               <  5:78249/125‑1 (MQ=255)                                                                                          attcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               >  6:78249/1‑125 (MQ=255)                                                                                             catcaAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCt                                                    >  7:138130/1‑149 (MQ=255)                                                                                                 aaGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTg                                                 <  8:221881/148‑1 (MQ=255)                                                                                                         gATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCttt                                          <  2:340372/147‑1 (MQ=255)                                                                                                         cgatctttCAAGGCAGCAATGGAAGATTGTCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCa                                        <  7:134472/143‑1 (MQ=255)                                                                                                           tatatTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCaaa                                      <  5:61129/149‑1 (MQ=255)                                                                                                              atTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATc                                                                                                                                <  4:327843/56‑1 (MQ=255)                                                                                                              atTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATc                                                                                                                                >  3:327843/1‑56 (MQ=255)                                                                                                               ttCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               <  6:206811/104‑1 (MQ=255)                                                                                                               ttCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                               >  5:206811/1‑104 (MQ=255)                                                                                                               ttCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAccc                                  >  1:57864/1‑149 (MQ=255)                                                                                                                tCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAAACGGGAAAATCAAAATATACTTATTTATATATATACAACTTTGGATCTTTCa                                        >  8:134472/1‑142 (MQ=255)                                                                                                                 ctaGGCAGCACTTGATGATTTGCTGATTTCAGAGCGTGCTTATTTGAGGCATGAACTAGTTGAAATATTAAACGCGCGGAGTATGGCAATCGGGTATATCAATATATTGTTATTTATATATCTAGCCCTTTGGATCTTTCAAAAcggg                                 <  8:68298/146‑4 (MQ=255)                                                                                                                 cAATGCACCAATCGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAcccc                                 <  8:67638/148‑1 (MQ=255)                                                                                                                 cAAGGCAGCAATGGATGATTGTCTGAATGCACAGCGTGCTTATTTGAGCCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAcccc                                 <  8:62517/148‑1 (MQ=255)                                                                                                                 cAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAcccc                                 <  8:138130/148‑1 (MQ=255)                                                                                                                    ggCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGt                             <  6:74046/149‑1 (MQ=255)                                                                                                                     gcagcaATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTc                            <  2:57864/149‑1 (MQ=255)                                                                                                                          aaTGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGt                       <  3:248581/149‑1 (MQ=255)                                                                                                                                      gCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCt           >  8:195105/1‑149 (MQ=255)                                                                                                                                               agagCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTg  >  2:44833/1‑149 (MQ=255)                                                                                                                                               agagCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTg  >  5:96685/1‑149 (MQ=255)                                                                                                                                                gagCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTAACGCTATGCATCTTTCAAAACCCCCTGTCGAACTTTAAGTACCCCTAAACACATg  >  8:135597/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  AGGTAGCTCTAGGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTG  >  NC_002947/5004460‑5004750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.