New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5004605 =	52 (0.860)	3 (0.050)	3/248	NT	6.1%	coding (957/3300 nt)	PP_4410	hypothetical protein
	?	NC_002947	5004651 =	44 (0.780)					coding (1003/3300 nt)	PP_4410	hypothetical protein

CAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGAAATTCACAAGCTTCGTACATTATAGCTGCGATGCCC  >  NC_002947/5004503‑5004789                                                                                                                                                     |                                                                                                                                           cagcCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCa                                                                                                                                            <  1:248753/149‑1 (MQ=255)   caggtgttgaggggtacttaaacttcgacagggggttttgaaagatccaaaggggtagatatataaataagtatatattgattttcccgattgccattctGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAg                                                                                                                                           <  4:219749‑M1/48‑1 (MQ=255)     cTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAAt                                                                                                                                        <  1:19088/149‑1 (MQ=255)      gtgttgaggggtacttaaacttcgacagggggttttgaaagatccaaaggggtagatatataaataagtatatattgattttcccgattgccattctGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATg                                                                                                                                       >  3:219749‑M1/98‑149 (MQ=255)        tCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATgg                                                                                                                                      <  7:144142/148‑1 (MQ=255)        tCATCCGAAAGTATACCCGACTATAGGCTTGACATTCACATTCATCAAGGTCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATgg                                                                                                                                      <  8:139326/148‑1 (MQ=255)            gCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATc                                                                                                                                 >  1:340372/1‑149 (MQ=255)                aaGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCggg                                                                                                                              >  7:221881/1‑148 (MQ=255)                   tataGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGaaaa                                                                                                                          >  6:52848/1‑149 (MQ=255)                       gCCGACTATAGGCTTGACATTCACATTCCTCACGGGCTGGAAATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTGATTTGAGGCATCAACCAGTTCAAAAATTAAAAGCGCGACGAATGGCAATCGGTAAAATCa                                                                                                                       >  7:68298/1‑148 (MQ=255)                       gCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      >  5:74046/1‑149 (MQ=255)                            cTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATAATCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAatatat                                                                                                                 <  6:311321/149‑1 (MQ=255)                                 ggCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATAc                                                                                                               <  6:118906/146‑1 (MQ=255)                                 ggCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATAc                                                                                                               >  5:118906/1‑146 (MQ=255)                                  gCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      >  6:219154/1‑138 (MQ=255)                                  gCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      <  5:219154/138‑1 (MQ=255)                                   cTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATTGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttatt                                                                                                          <  5:246222/149‑1 (MQ=255)                                   cTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttatt                                                                                                          <  5:251589/149‑1 (MQ=255)                                    ttGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttattt                                                                                                         >  6:61129/1‑149 (MQ=255)                                      gACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttattta                                                                                                        <  3:93243/148‑1 (MQ=255)                                              cattcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTAc                                                                                               <  8:102914/149‑1 (MQ=255)                                              cattcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTAc                                                                                               <  5:52848/149‑1 (MQ=255)                                               attcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      >  6:78249/1‑125 (MQ=255)                                               attcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      <  5:78249/125‑1 (MQ=255)                                                  catcaAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCt                                                                                           >  7:138130/1‑149 (MQ=255)                                                      aaGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTg                                                                                        <  8:221881/148‑1 (MQ=255)                                                              gATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCttt                                                                                 <  2:340372/147‑1 (MQ=255)                                                              cgatctttCAAGGCAGCAATGGAAGATTGTCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCa                                                                               <  7:134472/143‑1 (MQ=255)                                                                tatatTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCaaa                                                                             <  5:61129/149‑1 (MQ=255)                                                                    ttCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      >  5:206811/1‑104 (MQ=255)                                                                    ttCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa                                                                                                                      <  6:206811/104‑1 (MQ=255)                                                                    ttCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAccc                                                                         >  1:57864/1‑149 (MQ=255)                                                                     tCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAAACGGGAAAATCAAAATATACTTATTTATATATATACAACTTTGGATCTTTCa                                                                               >  8:134472/1‑142 (MQ=255)                                                                      ctaGGCAGCACTTGATGATTTGCTGATTTCAGAGCGTGCTTATTTGAGGCATGAACTAGTTGAAATATTAAACGCGCGGAGTATGGCAATCGGGTATATCAATATATTGTTATTTATATATCTAGCCCTTTGGATCTTTCAAAAcggg                                                                        <  8:68298/146‑4 (MQ=255)                                                                      cAATGCACCAATCGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAcccc                                                                        <  8:67638/148‑1 (MQ=255)                                                                      cAAGGCAGCAATGGATGATTGTCTGAATGCACAGCGTGCTTATTTGAGCCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAcccc                                                                        <  8:62517/148‑1 (MQ=255)                                                                      cAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAAcccc                                                                        <  8:138130/148‑1 (MQ=255)                                                                         ggCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGt                                                                    <  6:74046/149‑1 (MQ=255)                                                                          gcagcaATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTc                                                                   <  2:57864/149‑1 (MQ=255)                                                                               aaTGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGt                                                              <  3:248581/149‑1 (MQ=255)                                                                                           gCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCt                                                  >  8:195105/1‑149 (MQ=255)                                                                                                 cattctgcgtgcttttaatttttcaactggttgatgcctcaaataagcacgcAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAacac                                            >  3:219749‑M2/53‑149 (MQ=255)                                                                                                    agagCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTg                                         >  2:44833/1‑149 (MQ=255)                                                                                                    agagCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTg                                         >  5:96685/1‑149 (MQ=255)                                                                                                     gagCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTAACGCTATGCATCTTTCAAAACCCCCTGTCGAACTTTAAGTACCCCTAAACACATg                                         >  8:135597/1‑148 (MQ=255)                                                                                                     ctgcgtgcttttaatttttcaactggttgatgcctcaaataagcacgcAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTg                                         <  4:219749‑M2/100‑1 (MQ=255)                                                                                                       gcgtgcttttaatttttcaactggttgatgcctcaaataagcacgcAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCg                                       >  4:125630‑M2/47‑148 (MQ=255)                                                                                                         GTGCTTATTTGAGGCATCAACCATTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGaaa                                    >  3:301924‑M1/1‑149 (MQ=255)                                                                                                             TTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATAAATCTACCCCTTTGGATCTTACAAAACCCCCTGTCGAAGTTTAAGTACCCCTAAACACCTGCGAaattaa                                <  1:138970‑M1/149‑3 (MQ=255)                                                                                                                     ggCATCAACCAGTTGAAAAATTAAAAGCACGGAGAATGTCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAATTTTAATTACCCCTCAACACCTGCGAAATTCACTAGCTTc                        <  6:116742/149‑1 (MQ=255)                                                                                                                      gCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGAAATTCACAAGCTTCg                       >  3:163687/1‑149 (MQ=255)                                                                                                                        aTCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGAAATTCACAAGCTTCGTa                     <  5:39597/149‑1 (MQ=255)                                                                                                                              cAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGAAATTCACAAGCTTCGTACATta                >  1:217681/1‑148 (MQ=255)                                                                                                                                            aaaGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGAAATTCACAAGCTTCGTACATTATAGCTGCGATGccc  <  7:135597/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           CAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCTGCGAAATTCACAAGCTTCGTACATTATAGCTGCGATGCCC  >  NC_002947/5004503‑5004789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.