| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5291126 = | 46 (0.760) | 4 (0.070) | 4/256 | NT | 8.2% | coding (724/882 nt) | PP_4664 | LysR family transcriptional regulator |
| ? | NC_002947 | 5291174 = | 45 (0.770) | coding (772/882 nt) | PP_4664 | LysR family transcriptional regulator | |||||
GTAAAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5291277‑5291126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCC > NC_002947/5291174‑5291321 GTAAAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGG > 3:223381/1‑149GTAAAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGG < 4:355413/149‑1GTAAAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGCGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGG < 7:333735/149‑1 AAAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGC < 8:255886/148‑1 AAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCAC < 4:223381/149‑1 AAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCA < 8:170353/148‑1 ACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTA > 7:197523/1‑146 ACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTA < 8:197523/146‑1 CCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCA > 5:123520/1‑149 CAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACC > 4:103889/1‑149 ACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTC > 7:295769/1‑137 ACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTC < 8:295769/137‑1 CTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCC < 4:136362/149‑1 GTAAAGGTGGCTACCAGTTCTGCGGCATAGCCCGGCAATGCCGCAAAATCCCGTGCGCACACCAGCAACCGGCGGTTGGCCCATGGCTCCTGCAGTGCCACCCAGTGCAACGGCAGCATGCCTTGCCAGCGCTGTACTGCTGCCAGTGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5291277‑5291126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTTTACCGGCTGACGCGCAAGGGCGCACACCACTGTCGAGGCAAACCGCC > NC_002947/5291174‑5291321 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |