New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5291126 =46 (0.760)4 (0.070) 4/256 NT 8.2% coding (724/882 nt) PP_4664 LysR family transcriptional regulator
?NC_002947 5291174 = 45 (0.770)coding (772/882 nt) PP_4664 LysR family transcriptional regulator

TATGTCGGCCTGGGGGCCGGCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTT  >  NC_002947/5290979‑5291274
                                                                                                                                                    |                                                                                                                                                    
ggcggtttgcctcgacagtggtgtgcgcccttgcgcgtcagccggtaaaggtggctaccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccag                                                                                                                                                      <  4:136362‑M1/1‑1 (MQ=255)
       gCCTGGGGGCCGGCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTg                                                                                                                                              >  2:111791/1‑149 (MQ=255)
             gacagtggtgtgcgcccttgcgcgtcagccggtaaaggtggctaccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccaGt                                                                                                                                                     <  8:295769‑M1/2‑1 (MQ=255)
             gacagtggtgtgcgcccttgcgcgtcagccggtaaaggtggctaccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccaGt                                                                                                                                                     >  7:295769‑M1/136‑137 (MQ=255)
                ccGGCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTa                                                                                                                                     >  5:240460/1‑149 (MQ=255)
                ccGGCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGGGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTa                                                                                                                                     <  3:222838/149‑1 (MQ=255)
                  ggCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTCGTGCCACTGGCAGCAGTa                                                                                                                                     >  7:216270/1‑147 (MQ=255)
                   gCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAg                                                                                                                                  >  5:275955/1‑149 (MQ=255)
                    cAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAgc                                                                                                                                 >  3:45588/1‑149 (MQ=255)
                         cACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTg                                                                                                                             <  6:95751/148‑1 (MQ=255)
                                   gTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCAtgc                                                                                                                  >  1:351114/1‑149 (MQ=255)
                                   gTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCAtg                                                                                                                   <  4:204346/148‑1 (MQ=255)
                                       cTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGGGATCCGCATGGTCGCGGGCGGGGCCGGAATTCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCAtgctgc                                                                                                               <  1:273589/149‑1 (MQ=255)
                                          gacgagCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGGGCGTGCGTAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGtt                                                                                                           <  3:370968/146‑1 (MQ=255)
                                          gAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGtt                                                                                                           <  6:275955/149‑1 (MQ=255)
                                              agCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCAc                                                                                                       >  7:81849/1‑149 (MQ=255)
                                              agCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCAc                                                                                                       <  8:272233/149‑1 (MQ=255)
                                               gCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACt                                                                                                      >  7:26415/1‑149 (MQ=255)
                                                cAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTg                                                                                                     >  5:218423/1‑149 (MQ=255)
                                                 ggtggctaccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccaGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTg                                                                                                     >  4:103889‑M1/100‑149 (MQ=255)
                                                 aaGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCAt                                                                                                                    <  2:55592/133‑1 (MQ=255)
                                                 aaGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCAt                                                                                                                    >  1:55592/1‑133 (MQ=255)
                                                  aGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCTCTggg                                                                                                   >  8:298386/1‑149 (MQ=255)
                                                   tggctaccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccaGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTggg                                                                                                   >  5:123520‑M1/98‑149 (MQ=255)
                                                   gcgcTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGTCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGt                                                                                                  <  5:284462/149‑1 (MQ=255)
                                                     gcTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTgg                                                                                                >  4:128824/1‑149 (MQ=255)
                                                       taccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccaGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGt                                                                                                  <  8:197523‑M1/53‑1 (MQ=255)
                                                       taccagttctgcggcatagcccggcaatgccgcaaaatcccgtgcgcacaccagcaaccggcggttggcccatggctcctgcagtgccacccaGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGt                                                                                                  >  7:197523‑M1/94‑146 (MQ=255)
                                                        gCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCAc                                                                                             <  8:291270/149‑1 (MQ=255)
                                                            gAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCa                                                                                         <  4:45588/149‑1 (MQ=255)
                                                               gggCAGCGCATGCAGGTGCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGa                                                                                      <  4:111011/149‑1 (MQ=255)
                                                                      gcATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATgg                                                                               >  7:193802/1‑149 (MQ=255)
                                                                      gcATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGACACTGCAGGAGCCATgg                                                                               >  5:367817/1‑149 (MQ=255)
                                                                       cATGCAGGTTGGGGTGGGTGCGTTTGGGTTTTAGGGGGTGATCGTCTTGTTGGCGGGGGGTGCCGGTTTGGGGTTGGTGCCTCTGGGAGCAGTACAGCGCTGGAAAGGCATGCTGCCGTTGCACTGGTTGTCACTGCAGGAGCCATggg                                                                              <  8:216270/149‑1 (MQ=255)
                                                                            aGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAAc                                                                         >  4:47408/1‑149 (MQ=255)
                                                                              gTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAAccg                                                                       >  4:32702/1‑149 (MQ=255)
                                                                                    gtgcgtgcGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGtt                                                                 >  6:299302/1‑149 (MQ=255)
                                                                                        gtgcgGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTg                                                             <  8:26415/149‑1 (MQ=255)
                                                                                                ggggTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGc                                                                                          <  7:117402/112‑1 (MQ=255)
                                                                                                gggTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGATTCGGGGTGGTGCCACTGGCAGCAGTACAGCGATGGCAAGGCATGCTGCCGTTGCAGTGGGTGGCAATGc                                                                                          >  8:117402/1‑112 (MQ=255)
                                                                                                 ggTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCa                                                    >  6:279998/1‑149 (MQ=255)
                                                                                                  gTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGTAATCGGGGGGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCAc                                                   <  3:353731/149‑1 (MQ=255)
                                                                                                        tGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGAtt                                             >  6:204047/1‑149 (MQ=255)
                                                                                                        tGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGAtt                                             >  4:172724/1‑149 (MQ=255)
                                                                                                            gTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGc                                         >  2:364643/1‑149 (MQ=255)
                                                                                                                   gCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTg                                  >  3:136362/1‑149 (MQ=255)
                                                                                                                             gggcgggGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATg                        <  5:279998/149‑1 (MQ=255)
                                                                                                                                    gCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAg                  >  7:28697/1‑148 (MQ=255)
                                                                                                                                      cGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAAc               <  3:128824/149‑1 (MQ=255)
                                                                                                                                       ggAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACGGGGTGACACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATAGCCCGGCAATGCCGCaaaatc              <  6:367817/149‑3 (MQ=255)
                                                                                                                                          aTCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGt           <  6:240460/149‑1 (MQ=255)
                                                                                                                                            tCGGGGTGGTGCCACTGTCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCTCTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTa          <  7:298386/149‑1 (MQ=255)
                                                                                                                                            tCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTa          <  6:218423/149‑1 (MQ=255)
                                                                                                                                               gggTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGc        >  8:353409/1‑148 (MQ=255)
                                                                                                                                                  tggtgCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCAcc    <  3:172724/149‑1 (MQ=255)
                                                                                                                                                    GTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCtt  <  4:223381‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TATGTCGGCCTGGGGGCCGGCAGTGCACTGGGGTTGTACCTGGAAGAGCAAGCGCTGCACGAGGGGCAGCGCATGCAGGTTCGGGTGCGTGCGGAGGGGTTTGATGGGGTGATCCGCATGGTCGCGGGCGGGGCCGGAATCGGGGTGGTGCCACTGGCAGCAGTACAGCGCTGGCAAGGCATGCTGCCGTTGCACTGGGTGGCACTGCAGGAGCCATGGGCCAACCGCCGGTTGCTGGTGTGCGCACGGGATTTTGCGGCATTGCCGGGCTATGCCGCAGAACTGGTAGCCACCTT  >  NC_002947/5290979‑5291274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.