New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5337085 =	71 (1.180)	6 (0.110)	6/250	NT	8.3%	coding (535/1443 nt)	PP_4696	nitrogen regulation protein NR(I)
	?	NC_002947	5337130 =	66 (1.160)					coding (580/1443 nt)	PP_4696	nitrogen regulation protein NR(I)

GAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5337237‑5337085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccctgCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGG  >  NC_002947/5337130‑5337274                                                                                                                                                                                                                                                                                                            GAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGTCCGACTCGC                                                                                                                                                       >  3:123165/1‑149    CGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCT                                                                                                                                                    <  3:326471/149‑1                  GGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCC                                                                                                                                                      <  8:32249/133‑1                                                                                                        TTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAA                                                                                   >  5:107550/1‑114                                                                                                        TTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAA                                                                                   <  6:107550/114‑1                                                                                                            GCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCG                                            >  2:176593/1‑149                                                                                                             CAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGC                                           >  2:79324/1‑149                                                                                                                                       CGGTGCCCGACTCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCG                 <  1:176593/149‑1                                                                                                                                            CCCGACTCGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGTCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGG             <  1:79324/148‑1                                                                                                                                                   CGCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGG     <  5:204909/149‑1                                                                                                                                                    GCCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGA    <  4:187657/149‑1                                                                                                                                                     CCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAG   >  5:168566/1‑149                                                                                                                                                     CCCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAG   >  7:305351/1‑149                                                                                                                                                      CCTGCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCACGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGG  >  8:254512/1‑149                                                                                                                                                                                                                                                                                                            GAACGCGCCTTTTTCGTGGCCGAACAGTTCGGATTCGATCAGCGTTTCGGGGATGGCCGCGCAGTTCACCGAGATCATCGGTGCCTTGGCCCGGCGAGACAGGTTGTGCAGGGCGCGGGCCACCAGCTCTTTACCGGTGCCCGACTCGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5337237‑5337085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccctgCACAACCTGTCTCGCCGGGCCAAGGCACCGATGATCTCGGTGAACTGCGCGGCCATCCCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGG  >  NC_002947/5337130‑5337274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.