| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5337341 | 80 (1.330) | 8 (0.140) | 7/250 | NT | 10.3% | coding (791/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) |
| ? | NC_002947 | = 5337359 | 63 (1.100) | coding (809/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) | |||||
CCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5337187‑5337341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcctTCCTGCAGCACACGCAGCAGGCGAGCCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACA < NC_002947/5337359‑5337212 CCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGC > 1:286850/1‑149CCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGC > 3:317275/1‑149 CCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCT > 6:51531/1‑149 CCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCT > 6:325696/1‑149 CGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTC > 2:319415/1‑149 GAAACGCTGATCGAATCGGAACTGTTCGGCGACGAAATAGGCGGGTTGAGCGGGGCCATCGCCGGGCGCGCCGGGTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCG < 5:89049/149‑1 CGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTTCCTGCAGCACACGCAGCAGGC < 2:367440/148‑1 CGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTTCCTGCAGCACACGCAGCAGGC < 2:373230/148‑1 GGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTTCCTGCAGCACACGCAGCAGGCGA < 3:123318/149‑1 GAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTTCCTGCAGCACACGCAGCAGGCGAGCCTGG < 4:67304/149‑1 CCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTTCCTGCAGCACACGCAGCAGGCGAGCCTG > 1:257000/1‑132 CCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCTTCCTGCAGCACACGCAGCAGGCGAGCCTG < 2:257000/132‑1 GCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCG‑‑‑‑CCTGCAGCACACGCAGCAGGCGAGCC < 2:55344/115‑1 GCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCG‑‑‑‑CCTGCAGCACACGCAGCAGGCGAGCC > 1:55344/1‑115 GCCTTCCTGCAGCACACGCAGCAGGCGAACCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCG > 1:99977/1‑148 CCTTCCTGCAGCACACGCAGCAGGCGAGCCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAA > 3:202344/1‑149 CCTTCCTGCAGCACACGCAGCAGGCGAGCCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAA < 6:243194/149‑1 TTCCTGCAGCACACGCAGCAGGCGAGCCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACA < 8:337034/149‑1 TTCCTGCAGCACACGCAGCAGGCGAGCCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAA > 7:337034/1‑147 CCCGAAACGCTGATCGAATCCGAACTGTTCGGCCACGAAAAAGGCGCGTTCACCGGCGCCAGCGCCGGGCGCGCCGGCTTGGTGGAGGCCGCCGATGGCGGTACGCTGTTCCTCGATGAAATTGGCGAACTGCCGCTCGAAGCCCAGGCTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5337187‑5337341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcctTCCTGCAGCACACGCAGCAGGCGAGCCTGGGCTTCGAGCGGCAGTTCGCCAATTTCATCGAGGAACAGCGTACCGCCATCGGCGGCCTCCACCAAGCCGGCGCGCCCGGCGCTGGCGCCGGTGAACGCGCCTTTTTCGTGGCCGAACA < NC_002947/5337359‑5337212 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |