| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5358776 = | 71 (1.180) | 4 (0.070) | 4/252 | NT | 5.8% | intergenic (‑16/+12) | infB/nusA | translation initiation factor IF‑2/transcription termination/antitermination factor L |
| ? | NC_002947 | 5358816 = | 63 (1.100) | coding (1454/1482 nt) | nusA | transcription termination/antitermination factor L | |||||
CTGAACTGGCGGTGCGCGGCGTGGTTAACCGCGAAGACCTGGCCGAGCAGTCGATCGACGATCTGCTCGACATCGACGGCATCGACGAAGAGCGTGCCGGCAAGTTGATCATGGCCGCCCGAGCCCACTGGTTCGAGTAATTAGGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5358927‑5358776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGTTCAGCCGCCAGGTCTTTGTCCATGCCCTCAAGGGAGAGCA > NC_002947/5358816‑5358963 CTGAACTGGCGGTGCGCGGCGTGGTTAACCGCGAAGACCTGGCCGAGCAGTCGATCGACGATCTGCTCGACATCGACGGCATCGACGAAGAGCGTGCCGGCAAGTTGATCATGGCCGCCCGAGCCCACTGGTTCGAGTAATTAGGCGCG < 6:183388/149‑1 ATCATGGCCGCCCGAGCCCACTGGTTCGAGTAATTAGGCGCGGCCATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCCGTTAACCAAGCAGCGCACCGC > 8:279568/1‑149 ATGGCCGCCCGAGCCCACTGGTTCGAGTAATTAGGCGCGGCCATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAG > 1:190131/1‑149 TGGCCGCCCGAGCCCACTGGTTCGAGTAATTAGGCGCGGCCATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGT > 2:68994/1‑149 GTAATTAGGCGCGGCCATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGTTCAGCCGCCAGGTCTTTGTCCATGC < 7:279568/149‑1 GCGGCCATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGTTCAGCCGCCAGGTCTTTGTCCATGCCCTCAAGGGA < 8:67401/149‑1 GCCATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGTTCAGCCGCCAGGTCTTTGTCCATGCCCTCAAGGGAGAG > 6:56446/1‑149 CATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGTTCAGCCGCCAGGTCTTTGTCCATGCCCTCAAGGGAGAGCA < 7:154358/149‑1 CTGAACTGGCGGTGCGCGGCGTGGTTAACCGCGAAGACCTGGCCGAGCAGTCGATCGACGATCTGCTCGACATCGACGGCATCGACGAAGAGCGTGCCGGCAAGTTGATCATGGCCGCCCGAGCCCACTGGTTCGAGTAATTAGGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5358927‑5358776‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccATGATCAACTTGCCGGCACGCTCTTCGTCGATGCCGTCGATGTCGAGCAGATCGTCGATCGACTGCTCGGCCAGGTCTTCGCGGTTAACCACGCCGCGCACCGCCAGTTCAGCCGCCAGGTCTTTGTCCATGCCCTCAAGGGAGAGCA > NC_002947/5358816‑5358963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |