| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5509285 = | 68 (1.130) | 4 (0.070) | 3/252 | NT | 5.4% | coding (890/1266 nt) | urtA | urea ABC transporter substrate‑binding protein |
| ? | NC_002947 | 5509340 = | 74 (1.290) | coding (945/1266 nt) | urtA | urea ABC transporter substrate‑binding protein | |||||
CGGACCTTGTCAACGTCAGTGGACTTGGCTTTCTCGACAGCCTGGGCCCACATGTGGATGCCCACGTAGGTGGCTTCCATGGGGTCGTTGGTCACGGCCTTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGCGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5509438‑5509285‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCTTCACCCT > NC_002947/5509340‑5509486 ctGACCTTGTAATCGTCAGTTGACTTGGCTTTCTCGAGAGCCTGGGCCCACTTGTGGATGCCCACGTAGGTGGCTTCCATGGGGTCGTTGGTCACGGCCTTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGC < 4:200888/147‑1 CTTGTCAACGTCAGTGGACTTGGCTTTCTCGACAGCCTGGGCCCACATGTGGATGCCCACGTAGGTGGCTTCAATGGGGTCGTTGGTCACGGCATTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGCGACA > 3:179264/1‑148 CGGCCTTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTG > 7:139787/1‑149 GGCCTTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGA > 4:62389/1‑149 CTTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGAC > 3:311220/1‑147 CTTGTCGGCACCTGGCAGGCCCTTGGCCTTGCCGTAGGCCTTCCAGTCGGCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGAC > 1:230548/1‑147 TCGGCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGC < 8:139787/149‑1 GACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGG > 3:284084/1‑143 GACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGG < 4:284084/143‑1 ACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCTTCACC < 5:379995/149‑1 AAGGCCGTGACCAACGACCCCATGGAATCAACCTACGTGGGCAAACACATGTGCGCCCCTGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGTAGCCGTCGGGCTTCACACT > 1:11685/1‑149 CGGACCTTGTCAACGTCAGTGGACTTGGCTTTCTCGACAGCCTGGGCCCACATGTGGATGCCCACGTAGGTGGCTTCCATGGGGTCGTTGGTCACGGCCTTGTCGGCACCTGGCAGGCCCTTGGCCTTGGCGTAGGCCTTCCAGTCGGCGACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5509438‑5509285‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCTTCACCCT > NC_002947/5509340‑5509486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |