New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5509285 =68 (1.130)4 (0.070) 3/252 NT 5.4% coding (890/1266 nt) urtA urea ABC transporter substrate‑binding protein
?NC_002947 5509340 = 74 (1.290)coding (945/1266 nt) urtA urea ABC transporter substrate‑binding protein

GAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCTTCACCCT  >  NC_002947/5509194‑5509486
                                                                                                                                                   |                                                                                                                                                  
gtcaacgtcagtggacttggctttctcgacagcctgggcccacatgtggatgcccacgtaggtggcttccatggggtcgttggtcacggccTTGTCGCCGACTGGAAGGCCTACGGCAAGGCCAAGGGCCTGCCAGGTGCCGACAAg                                                                                                                                                    >  1:230548‑M1/92‑147 (MQ=255)
gtcaacgtcagtggacttggctttctcgacagcctgggcccacatgtggatgcccacgtaggtggcttccatggggtcgttggtcacggccTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAg                                                                                                                                                    >  3:311220‑M1/92‑147 (MQ=255)
 tcaacgtcagtggacttggctttctcgacagcctgggcccacatgtggatgcccacgtaggtggcttccatggggtcgttggtcacggccTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGcc                                                                                                                                                 >  4:62389‑M1/91‑149 (MQ=255)
 aaCTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGcc                                                                                                                                                 <  1:195241/149‑1 (MQ=255)
  caacgtcagtggacttggctttctcgacagcctgggcccacatgtggatgcccacgtaggtggcttccatggggtcgttggtcacggccTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCg                                                                                                                                                >  7:139787‑M1/90‑149 (MQ=255)
      cgcgGCATCGACACCAAACCGCTGGTGGGCCACCTGGGGGCGTGGAACTACTTCTAATCGGTGGATAACCCGGTCAACCTGATGTTTGTCTGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGt                                                                                                                                               <  1:293268/147‑1 (MQ=255)
      cgcgGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGa                                                                                                                                             <  1:19773/148‑1 (MQ=255)
      cgcgGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGa                                                                                                                                             <  5:307573/148‑1 (MQ=255)
      cgcgGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGCATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGa                                                                                                                                             <  7:139384/148‑1 (MQ=255)
      cgcgGCATCGACACCAAACCGCTGGGGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGa                                                                                                                                             <  7:122964/148‑1 (MQ=255)
           cATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACg                                                                                                                                       <  8:232718/149‑1 (MQ=255)
               gACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGAccc                                                                                                                                   >  1:71505/1‑149 (MQ=255)
               gACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGAccc                                                                                                                                   >  2:8064/1‑149 (MQ=255)
                 cacCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGAcccc                                                                                                                                  <  4:38909/148‑1 (MQ=255)
                    cAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATg                                                                                                                               >  7:344179/1‑148 (MQ=255)
                        gcGCTGCTGGGCCACCTGGCGGCGTGGAACTACTTCGACTCCGTCCATAACCCGGTCAACCAGAAGTTCGTCGCCGCCTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGc                                                                                                                          <  8:68664/148‑1 (MQ=255)
                               tggGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTAc                                                                                                                   <  8:344179/149‑1 (MQ=255)
                                 ggCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGt                                                                                                                 <  1:48989/149‑1 (MQ=255)
                                  gCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTg                                                                                                                <  2:71505/149‑1 (MQ=255)
                                  gCCACCTGGCGGAGGCGAACTCCATCGAATCGGTGGATTACCCGGTCAACCAGAAGTTTGTCGCCGAGTGGAAGGCCTTCGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCAAGGAAGCCACCTACGTg                                                                                                                <  4:194249/149‑1 (MQ=255)
                                       cTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCAt                                                                                                           >  2:379652/1‑149 (MQ=255)
                                        tGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTgg                                                                                                               <  6:350045/144‑1 (MQ=255)
                                        tGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTgg                                                                                                               >  5:350045/1‑144 (MQ=255)
                                          gcggcgTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCca                                                                                                        >  8:34640/1‑149 (MQ=255)
                                               gTGGAACTACTTCGAATCTGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACAtgt                                                                                                   <  7:284382/149‑1 (MQ=255)
                                                      tactTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCa                                                                                            <  7:121532/149‑1 (MQ=255)
                                                        ctTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAgg                                                                                          <  3:40212/149‑1 (MQ=255)
                                                         ttCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGc                                                                                         >  4:72082/1‑149 (MQ=255)
                                                         ttCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGc                                                                                         >  5:26889/1‑149 (MQ=255)
                                                            gAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGt                                                                                      >  5:26492/1‑149 (MQ=255)
                                                              aTCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCg                                                                                    <  6:26492/149‑1 (MQ=255)
                                                               tCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCga                                                                                   <  3:144496/149‑1 (MQ=255)
                                                               tCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCga                                                                                   >  3:269431/1‑149 (MQ=255)
                                                                  gTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCgaga                                                                                 >  6:134812/1‑148 (MQ=255)
                                                                  gTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCgaga                                                                                 >  7:18683/1‑148 (MQ=255)
                                                                  gTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCgaga                                                                                 >  5:348868/1‑148 (MQ=255)
                                                                    ggATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAg                                                                              >  1:6183/1‑149 (MQ=255)
                                                                    ggATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAg                                                                              >  3:24339/1‑149 (MQ=255)
                                                                         aCCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCGACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCaa                                                                          <  4:269431/148‑1 (MQ=255)
                                                                         aCCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCaa                                                                          <  6:348868/148‑1 (MQ=255)
                                                                          cccGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGt                                                                        >  4:169669/1‑149 (MQ=255)
                                                                           ccGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTc                                                                       >  6:213274/1‑149 (MQ=255)
                                                                              gTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCAc                                                                    <  1:8064/149‑1 (MQ=255)
                                                                                   ccAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACg                                                               >  3:190182/1‑149 (MQ=255)
                                                                                   ccAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACg                                                               >  3:318082/1‑149 (MQ=255)
                                                                                       cggccttgtcggcacctggcaggcccttggccttggcgtaggccttccagtcggcgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTg                                                            >  7:139787‑M2/61‑149 (MQ=255)
                                                                                       aaGTTTGTCGCCGACTGGAAGGCCTACGCCTAGGCCAAGGGCCTGCCAGGTGCCGACAAGGGCGTGACCAAGGACCCCATGGAAGCCACCTACGTCGGCATCCAGATGTGGGCCCAGGCTGTCGAGAATGCCAAGTCCACTGACGtt                                                             <  2:257368/147‑1 (MQ=255)
                                                                                        ggccttgtcggcacctggcaggcccttggccttggcgtaggccttccagtcggcgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGa                                                           >  4:62389‑M2/60‑149 (MQ=255)
                                                                                          tttGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGAc                                                          >  6:370295/1‑147 (MQ=255)
                                                                                          tttGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGAc                                                          >  3:181455/1‑147 (MQ=255)
                                                                                           cttgtcggcacctggcaggcccttggccttggcgtaggccttccagtcggcgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGAc                                                          >  3:311220‑M2/57‑147 (MQ=255)
                                                                                           cttgtcggcacctggcaggcccttggccttgccgtaggccttccagtcggcgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGAc                                                          >  1:230548‑M2/57‑147 (MQ=255)
                                                                                            TGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAATGCCGTGACCAACGACCCCATTGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAg                                                       >  3:179264‑M1/1‑148 (MQ=255)
                                                                                                 GCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACAAGTGGGCCCAGGCTCTCGAGAAAGCCAAGTCAACTGACGATTACAAGgtcag                                                  <  4:200888‑M1/149‑3 (MQ=255)
                                                                                                  ccGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCcgc                                                 >  4:90950/1‑149 (MQ=255)
                                                                                                     aCTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGaa                                              <  2:6183/149‑1 (MQ=255)
                                                                                                     aCTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGaa                                              <  8:18683/149‑1 (MQ=255)
                                                                                                          aaGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACt                                         <  5:213274/149‑1 (MQ=255)
                                                                                                           aGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACt                                         <  5:216935/148‑1 (MQ=255)
                                                                                                           aGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACt                                         >  6:216935/1‑148 (MQ=255)
                                                                                                             gCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGc                                      >  6:379995/1‑149 (MQ=255)
                                                                                                               cTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCAc                                                                    <  6:195676/117‑1 (MQ=255)
                                                                                                                 aCGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCAAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCggg                                  >  5:84855/1‑149 (MQ=255)
                                                                                                                  cGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCggg                                  <  5:12308/148‑1 (MQ=255)
                                                                                                                  cGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCgg                                   <  2:273932/147‑1 (MQ=255)
                                                                                                                  cGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCgg                                   <  4:52467/147‑1 (MQ=255)
                                                                                                                     caaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCa                                >  3:6259/1‑147 (MQ=255)
                                                                                                                     caaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCa                                >  8:67015/1‑147 (MQ=255)
                                                                                                                     caaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCa                                >  3:90936/1‑147 (MQ=255)
                                                                                                                     caaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCa                                >  1:144126/1‑147 (MQ=255)
                                                                                                                     caaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCa                                >  1:309447/1‑147 (MQ=255)
                                                                                                                      aaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCagag                             <  5:370295/149‑1 (MQ=255)
                                                                                                                      aaggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCagag                             <  6:26889/149‑1 (MQ=255)
                                                                                                                      aaggcaaaggGCGTGCCAGTTGCCTACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCAAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCagag                             <  3:200888/149‑1 (MQ=255)
                                                                                                                        ggccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCt                           >  8:111624/1‑149 (MQ=255)
                                                                                                                         gccaaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGCGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCtt                          >  1:122439/1‑149 (MQ=255)
                                                                                                                         gccaaggGCCTGCAAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGCGCAGAGCtt                          >  5:221544/1‑149 (MQ=255)
                                                                                                                           caaggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTc                         >  3:59445/1‑148 (MQ=255)
                                                                                                                             aggGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCAAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAg                      <  6:84855/149‑1 (MQ=255)
                                                                                                                              gggCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGaaa                                                                               >  6:274318/1‑91 (MQ=255)
                                                                                                                              gggCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGaaa                                                                               <  5:274318/91‑1 (MQ=255)
                                                                                                                               ggCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGgc                    <  1:379652/149‑1 (MQ=255)
                                                                                                                                gCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGgcg                   <  3:90950/149‑1 (MQ=255)
                                                                                                                                     ccAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTc              >  4:76413/1‑149 (MQ=255)
                                                                                                                                       aGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCgg            <  4:24339/149‑1 (MQ=255)
                                                                                                                                         tcggcgacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGc          <  8:139787‑M2/139‑1 (MQ=255)
                                                                                                                                            ccGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTAGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAACGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCtt        >  2:373657/1‑148 (MQ=255)
                                                                                                                                              gacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCggg           <  4:284084‑M2/138‑1 (MQ=255)
                                                                                                                                              gacaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCggg           >  3:284084‑M2/6‑143 (MQ=255)
                                                                                                                                               acaaGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCTTCAcc    <  5:379995‑M2/145‑1 (MQ=255)
                                                                                                                                                 aaGGCCGTGACCAACGACCCCATGGAATCAACCTACGTGGGCAAACACATGTGCGCCCCTGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGTAGCCGTCGGGCTTCACACt  >  1:11685‑M2/3‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GAACTGCGCGGCATCGACACCAAACCGCTGGTGGGCCACCTGGCGGCGTGGAACTACTTCGAATCGGTGGATAACCCGGTCAACCAGAAGTTTGTCGCCGACTGGAAGGCCTACGCCAAGGCCAAGGGCCTGCCAGGTGCCGACAAGGCCGTGACCAACGACCCCATGGAAGCCACCTACGTGGGCATCCACATGTGGGCCCAGGCTGTCGAGAAAGCCAAGTCCACTGACGTTGACAAGGTCCGCGAAGCACTGGCCGGGCAGAGCTTCGAGGCGCCGTCGGGCTTCACCCT  >  NC_002947/5509194‑5509486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.