New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5774507	34 (0.560)	3 (0.050)	3/252	NT	7.6%	coding (374/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase
	?	NC_002947	= 5774533	41 (0.710)					coding (400/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase

GCGCCGTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5774354‑5774507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaggACGATTCGCGCAGCGGGATCTGCTCGCCTTCGATGGCCGGTACCAGGCCTGCGTAGTATTCCAGCACGTCGGCGCCGGTAACGATGTCGACGTAGCGGGTTTCGGAGTACGACTTGCCG  <  NC_002947/5774533‑5774415                                                                                                                                                                                                                                                                                   GCGCCGTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATC                                                                                                                              <  4:275455/149‑1    CCGTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAA                                                                                                                           <  2:263264/149‑1     CGTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAG                                                                                                                          <  2:179753/149‑1      GTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGG                                                                                                                         <  5:21878/149‑1                                       GCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGACGATTCGCGCAGCGGGATCTGCTCGCCTTCGA                                                                                        <  3:188003/149‑1                                              TGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGACGATTCGCGCAGCGGGATCTGCTCGCCTTCGATGGCC                                                                                   >  1:41539/1‑147                                              TGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGACGATTCGCGCAGCGGGATCTGCTCGCCTTCGATGGCC                                                                                   <  2:41539/147‑1                                                                                                                                                          GACGATTCGCGCAGCGGGATCTGCTCGCCTTCGATGGCCGGTACCAGGCCTGCGTAGTATTCCAGCACGTCGGCGCCGGTAACGATGTCGACGTAGCGGGTTTCGGAGTACGACTTGCCG  <  8:67073/120‑1                                                                                                                                                                                                                                                                                   GCGCCGTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5774354‑5774507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaggACGATTCGCGCAGCGGGATCTGCTCGCCTTCGATGGCCGGTACCAGGCCTGCGTAGTATTCCAGCACGTCGGCGCCGGTAACGATGTCGACGTAGCGGGTTTCGGAGTACGACTTGCCG  <  NC_002947/5774533‑5774415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.