New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5774507	34 (0.560)	3 (0.050)	3/252	NT	7.6%	coding (374/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase
	?	NC_002947	= 5774533	41 (0.710)					coding (400/1473 nt)	betB	NAD‑dependent betaine aldehyde dehydrogenase

GTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGCCCCGGCCCTGGCCGCTGGCAACGCGATGATC  >  NC_002947/5774359‑5774655                                                                                                                                                     |                                                                                                                                                     gTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGG                                                                                                                                                      <  5:21878‑M1/149‑1 (MQ=255)    gACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGc                                                                                                                                                     >  5:112833/1‑147 (MQ=255)    gACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGa                                                                                                                                                   <  2:24652/149‑1 (MQ=255)      cATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGc                                                                                                                                                 <  5:229977/149‑1 (MQ=255)      cATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGc                                                                                                                                                 <  2:122043/149‑1 (MQ=255)       atgcTGCGCGAGCGCAAAGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCa                                                                                                                                                <  3:45052/146‑1 (MQ=255)                    gcAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGAAGGAATACTACGCAGGCCTGGTACCGGCCATCTAAGGCGAGCAGATCCCGCTgcgc                                                                                                                                   >  7:313002/1‑149 (MQ=255)                                  gCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGacgattcgcgcagcgggatctgctcgccttcga                                                                                                                     <  3:188003‑M1/149‑34 (MQ=255)                                  gCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGt                                                                                                                     <  8:73429/149‑1 (MQ=255)                                    cATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTc                                                                                                                    >  5:156452/1‑148 (MQ=255)                                        cTGGAACCCCTGGACACCGGCAAGTCGGACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATACCGCTGCGCGAATCGTCCTTCTTCTaca                                                                                                                <  4:220265/148‑1 (MQ=255)                                         tGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGacgattcgcgcagcgggatctgctcgccttcgatggcc                                                                                                                >  1:41539‑M1/1‑109 (MQ=255)                                         tGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGacgattcgcgcagcgggatctgctcgccttcgatggcc                                                                                                                <  2:41539‑M1/147‑39 (MQ=255)                                           gAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACAccc                                                                                                             <  6:112833/148‑1 (MQ=255)                                           gAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACccg                                                                                                            >  4:160297/1‑149 (MQ=255)                                                      cacCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGc                                                                                                 >  7:164467/1‑149 (MQ=255)                                                      cacCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGc                                                                                                 >  6:271234/1‑149 (MQ=255)                                                        ccGGCAAGTCGTACTCCGAAACCCCCTACGTCGACCTCGTTACCGGCGCCGACGCGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTg                                                                                               <  6:273647/149‑1 (MQ=255)                                                         cGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTc                                                                                                                           <  8:67073‑M2/120‑2 (MQ=255)                                                         cGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTgg                                                                                              >  1:191749/1‑149 (MQ=255)                                                             aaGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGt                                                                                          <  2:191749/149‑1 (MQ=255)                                                                   tACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGt                                                                                    <  8:163095/149‑1 (MQ=255)                                                                      tCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTggg                                                                                 >  4:230577/1‑149 (MQ=255)                                                                       ccGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTggg                                                                                 >  6:72751/1‑148 (MQ=255)                                                                        cGAAACCCGCTACGTCGACATCGTTACCGGCGCCGCCGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTa                                                                               >  7:132033/1‑149 (MQ=255)                                                                           aaCCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCg                                                                            <  8:164467/149‑1 (MQ=255)                                                                            aCCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCgg                                                                           >  7:54056/1‑149 (MQ=255)                                                                            aCCCGCTACGTCGACATCGTTACCGCCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCgg                                                                           <  3:278000/149‑1 (MQ=255)                                                                              ccGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGc                                                                                            >  6:284017/1‑130 (MQ=255)                                                                              ccGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGc                                                                                            <  5:284017/130‑1 (MQ=255)                                                                                               ttACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATc                                                        <  4:308565/149‑1 (MQ=255)                                                                                                     gcgcCGACGTGCTGGAATACTACTCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTgg                                                                                  <  1:159756/117‑1 (MQ=255)                                                                                                     gcgcCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTgg                                                                                  >  2:159756/1‑117 (MQ=255)                                                                                                          gACGTGCTTGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCt                                             >  7:348026/1‑149 (MQ=255)                                                                                                           aCGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCtg                                            <  3:230577/149‑1 (MQ=255)                                                                                                             gTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCtgtg                                          <  3:160297/149‑1 (MQ=255)                                                                                                                 tGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGaaa                                      >  5:378266/1‑149 (MQ=255)                                                                                                                  ggAATACTACGCACGCCTTGTACCGTCCATCGAAGGCGAGCATATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCTAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAAt                                     <  7:236211/149‑1 (MQ=255)                                                                                                                   gAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCAGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATc                                    >  5:84346/1‑149 (MQ=255)                                                                                                                        ctacGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGAGCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGccc                               <  8:132033/149‑1 (MQ=255)                                                                                                                         tacGCAGGCCTGGTACCGGCCATCGAAGCCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGcccc                              >  1:214596/1‑149 (MQ=255)                                                                                                                                 ccTGGTACCGGCCATCGTAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGCCCCGGCCCTgg                      >  5:182087/1‑149 (MQ=255)                                                                                                                                         cGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGGATCGGTGCCGGGACCTACCCGATCCAGAGCGCCCTGTGGAAATCTGCCCCGGCCCTGGCCGCggg               >  3:195337/1‑148 (MQ=255)                                                                                                                                          ggCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTccttcgatggccggtaccaggcctgcgtagtattccagcacgtcggcgccggtaacgatgtcgacgtagcgggtttcggagtacgacttgccggtgtccagggtttcca               >  1:41539‑M2/1‑38 (MQ=255)                                                                                                                                          ggCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTccttcgatggccggtaccaggcctgcgtagtattccagcacgtcggcgccggtaacgatgtcgacgtagcgggtttcggagtacgacttgccggtgtccagggtttcca               <  2:41539‑M2/147‑110 (MQ=255)                                                                                                                                               tCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTccttcgatggccggtaccaggcctgcgtagtattccagcacgtcggcgccggtaacgatgtcgacgtagcgggtttcggagtacgacttgccggtgtccagggtttccagcatggc        <  3:188003‑M2/149‑117 (MQ=255)                                                                                                                                                    ggCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGCCCCGGCCCTGGCCGCTGGCAACGCgatgat   <  4:263868/149‑1 (MQ=255)                                                                                                                                                     gacgattcgcgcagcgggatctgctcgccttcgatggccggtaccaggcctgcgtagtattccagcacgtcggcgccggtaacgatgtcgacgtagcgggtttcggagtacgacttgccg                               <  8:67073‑M1/120‑120 (MQ=255)                                                                                                                                                     gCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGCCCCGGCCCTGGCCGCTGGCAACGCGATGATc  <  6:26130/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTCGACATCCTGCGCGAGCGCAACGATGAGCTGGCCATGCTGGAAACCCTGGACACCGGCAAGTCGTACTCCGAAACCCGCTACGTCGACATCGTTACCGGCGCCGACGTGCTGGAATACTACGCAGGCCTGGTACCGGCCATCGAAGGCGAGCAGATCCCGCTGCGCGAATCGTCCTTCGTCTACACCCGCCGCGAGCCGCTGGGCGTGACCGTGGGTATCGGTGCCTGGAACTACCCGATCCAGATCGCCCTGTGGAAATCTGCCCCGGCCCTGGCCGCTGGCAACGCGATGATC  >  NC_002947/5774359‑5774655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.