New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5811000	74 (1.230)	4 (0.070)	4/254	NT	5.0%	coding (328/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811050	80 (1.380)					coding (378/2220 nt)	priA	primosome assembly protein

CCTGCTCGACCCGGTGTCCCCCATCCCCGCGTCGCTGTTCAAGTTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGATACCCTGAGCTGGGCGCTGCCCACGCTACTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5810879‑5811000 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGACGCGGGG  <  NC_002947/5811050‑5810903                                                                                                                                                                                                                                                                                CCTGCTCGACCCGGTGTCCCCCATCCCCCCGTCGCTGTTCAAGTTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGATACCCTGAGCTGGGCGCTGCCCACGCTACTGCGCCCGGGGCTATGTGCCAGAAGCGTTCCTG                                                                                                                           >  1:214740/1‑149         ACCCGGTGTCCCCCATCCCCGCGTCGCTGTTCAAGTTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGATACCCTGAGCTGGGCGCTGCCCACGCTACTGCGCCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTT                                                                                                                   >  5:88483/1‑149                               GTCGCTGTTCAAGTTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGATACCCTGAGCTGGGCGCTGCCCACGCTACTGCGCCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAG                                                                                             <  2:214740/149‑1                                  GCTGTTCAAGTTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGATACCCTGAGCTGGGCGCTGCCCACGCTACTGCGCCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTA                                                                                           <  6:88483/148‑1                                                                                                                       CGCCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGACGCG     <  4:140145/149‑1                                                                                                                        GCCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGACGCGG    <  2:355680/149‑1                                                                                                                        GCCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGACGCGG    <  7:54084/149‑1                                                                                                                         CCCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGCCGCGGG   >  8:147459/1‑149                                                                                                                          CCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGACGCGGGG  >  3:214683/1‑149                                                                                                                                                                                                                                                                                CCTGCTCGACCCGGTGTCCCCCATCCCCGCGTCGCTGTTCAAGTTGTGCCTGTGGACCGCCCAGTACTACCAGCACAGCCTGGGCGATACCCTGAGCTGGGCGCTGCCCACGCTACTGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5810879‑5811000 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccCGGGGCTATGTGCCAGAAGCGTTCCTGGCGCATTTCGGCGGCTTCGCCCTGGCGCAGTAGCGTGGGCAGCGCCCAGCTCAGGGTATCGCCCAGGCTGTGCTGGTAGTACTGGGCGGTCCACAGGCACAACTTGAACAGCGACGCGGGG  <  NC_002947/5811050‑5810903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.