New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5978356 =	82 (1.360)	5 (0.090)	4/252	NT	6.0%	coding (761/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	5978400 =	78 (1.360)					coding (717/993 nt)	PP_5241	LuxR family transcriptional regulator

CTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTGTTGCAGACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5978509‑5978356 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCA  >  NC_002947/5978400‑5978546                                                                                                                                                                                                                                                                                                               CTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTGTTGCAGACAGTGTGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAG                                                                                                                                                          <  6:176492/149‑1  TGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTTTTGCAGACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGG                                                                                                                                                         >  8:43047/1‑149  TGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTGTTGCAGACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGG                                                                                                                                                         >  3:9777/1‑149     TTTCGTCACCTTGCCGATGACCTTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTGTTGCAGACAGTGCGCGCCCGGGGCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGC                                                                                                                                                      <  8:287293/149‑1     TTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTGTTGCAGACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGC                                                                                                                                                      <  5:49068/149‑1                                                                                                   TTGCAGACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGG                                                        >  8:62321/1‑149                                                                                                         ACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGT                                                  >  5:48764/1‑149                                                                                                           AGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGC                                                >  4:166633/1‑149                                                                                                           AGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGC                                                >  5:21762/1‑149                                                                                                                                          AAGTGGCTGCAGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGG                 <  6:21762/149‑1                                                                                                                                                       CGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGG    <  7:199373/149‑1                                                                                                                                                          GCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCA  >  6:40732/1‑148                                                                                                                                                                                                                                                                                                               CTGGTTTCGGCACCATCCCGATGACCGTCCAGGCCATGCGCGCCGGGGCGGTGGAATTTCTGACCAAGCCGTTCGATGAAGACCAGTTGCTGACCCTGTTGCAGACAGTGCGCGCCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5978509‑5978356 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGTCAGAAATTCCACCGCCCCGGCGCGCATGGCCTGGACGGTCATCGGGATGGTGCCGAAACCAGTCATGAACACGATCGGCCAGGGCAGCGCCAGCCGGCA  >  NC_002947/5978400‑5978546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.