New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5983860 =	84 (1.400)	4 (0.070)	4/246	NT	5.1%	coding (4505/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase
	?	NC_002947	5983906 =	71 (1.270)					coding (4551/5049 nt)	PP_5242	GAF domain‑containing sensor histidine kinase

GGCGTCGGCCGAGGTCAGGCGCACCACCTCGCGGATCAATTCGTCCAGCTTCACCGCCTTGAGTTGCATCGGTGACTGCTTGGCCAGGGACCGCAGCGCCCGCACGATGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5984014‑5983860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaaCATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAAG  >  NC_002947/5983906‑5984050                                                                                                                                                                                                                                                                                                              GGCGTCGGCCGAGGTCAGGCGCACCACCTCGCGGATCAATTCGTCCAGCTTCACCGCCTTGAGTTGCATCGGTGACTGCTTGGCCAGGGACCGCAGCGCCCGCACGATGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGC                                                                                                                                                         >  8:215243/1‑149       GGCCGAGGTCAGGCGCACCACCTCGCGGATCAATTCGTCCAGCTTCACCGCCTTGAGTTGCATCGGTGACTGCTTGGCCAGGGACCGCAGCGCCCGCACGATGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGCAA                                                                                                                                                   <  4:114897/149‑1                                                    CACCGCCTTGAGTTGCATCGGTGACTGCTTGGCCAGGGACCGCAGCGCCCGCACGATGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGC                                                                                                                                                     <  4:57499/102‑1                                                    CACCGCCTTGAGTTGCATCGGTGACTGCTTGGCCAGGGACCGCAGCGCCCGCACGATGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGC                                                                                                                                                     >  3:57499/1‑102                                                                                                            TGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGCAACATCGTGCTGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGA                                                    <  7:197688/143‑1                                                                                                            TGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGA                                                    >  8:197688/1‑143                                                                                                              TTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCC                                            >  3:361722/1‑149                                                                                                                                      CGGATGTCTTCCAGGCCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGAT                    <  4:361722/149‑1                                                                                                                                                  gggaCGGCAACATCGTGCGGGCGCTCCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGCCGCTGAAGCTGGACGAATTGATCCTCGAGGAGGTGCGCCTGACCTCGGCCGACGCAGCCAAGGGCAAGGTGGATGTGCAGACACGc        >  5:226957/5‑148                                                                                                                                                     CCGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTG     <  3:85912/149‑1                                                                                                                                                      CGGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGTATGTGCAGACACGGCTGA    <  6:26321/149‑1                                                                                                                                                       GGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAA   <  5:213870/149‑1                                                                                                                                                       GGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAA   <  7:306878/149‑1                                                                                                                                                       GGCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGCACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTG     >  2:74567/1‑147                                                                                                                                                        GCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAAG  >  1:209267/1‑149                                                                                                                                                        GCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAAG  >  8:128323/1‑149                                                                                                                                                        GCAACATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAAG  >  2:24836/1‑149                                                                                                                                                                                                                                                                                                              GGCGTCGGCCGAGGTCAGGCGCACCACCTCGCGGATCAATTCGTCCAGCTTCACCGCCTTGAGTTGCATCGGTGACTGCTTGGCCAGGGACCGCAGCGCCCGCACGATGTTGCCGGCCCGTTCGCTGTCGTTGCGGATGTCTTCCAGGCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5984014‑5983860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggcaaCATCGTGCGGGCGCTGCGGTCCCTGGCCAAGCAGTCACCGATGCAACTCAAGGCGGTGAAGCTGGACGAATTGATCCGCGAGGTGGTGCGCCTGACCTCGGCCGACGCCGCCAAGGGCAAGGTGGATGTGCAGACACGGCTGAAG  >  NC_002947/5983906‑5984050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.