New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	478258 =	38 (0.630)	3 (0.050)	3/260	NT	7.7%	intergenic (+6/+104)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	35 (0.590)					intergenic (+107/+3)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

GCCGCTGTCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTT  >  NC_002947/478111‑478391                                                                                                                                                    |                                                                                                                                      gCCGCTGTCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTa                                                                                                                                      >  4:109467/1‑149 (MQ=255)    gCTGTCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCg                                                                                                                                   >  6:2798/1‑149 (MQ=255)      tGTCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGc                                                                                                                                 <  4:36470/149‑1 (MQ=255)      tGTCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGc                                                                                                                                 >  4:186673/1‑149 (MQ=255)        tCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGc                                                                                                                                 <  8:293594/147‑1 (MQ=255)        tCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGc                                                                                                                                 <  7:248479/147‑1 (MQ=255)        gcGTGGCTGGCGCCCGCCCTGGTGCAGCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGc                                                                                                                                 <  3:276914/146‑1 (MQ=255)             gCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTc                                                                                                                           <  7:55397/148‑1 (MQ=255)              cTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTcgc                                                                                                                         <  8:79266/149‑1 (MQ=255)                 gcgcCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCgg                                                                                                                       <  7:46530/148‑1 (MQ=255)                  cgcCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGt                                                                                                                     <  3:370509/149‑1 (MQ=255)                   gcCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGt                                                                                                                     >  1:219190/1‑148 (MQ=255)                   gcCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGt                                                                                                                     >  3:276724/1‑148 (MQ=255)                     ccGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTaaa                                                                                                                  >  2:153554/1‑149 (MQ=255)                          gttgTGGATCCGGGTGTGGGGAAGTGCTTGGCGCAGCTGTGGCTGGAAGCGCAGATCGATCAGGTAGTGGCCCCGGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGc                                                                                                             <  4:334181/146‑1 (MQ=255)                          cTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTATTAGCGGGTtaaaaccc                                                                                                             >  1:190961/1‑144 (MQ=255)                                cATCCGCGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAACCGCAGAACGATCAGGTACTGGCCCCCGTGGCCTATCAGTGCCGCGGGTTGCACTTGACGCCCGCTTGAGCCTGTAACGGCCTCTTCGCGCGTAAACCCGc                                                                                                             >  3:334181/1‑143 (MQ=255)                                 aTCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTac                                                                                                       >  2:304618/1‑148 (MQ=255)                                  tCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTacga                                                                                                     >  6:271220/1‑149 (MQ=255)                                      ggTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACggg                                                                                                 >  6:277181/1‑149 (MQ=255)                                          tgGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCt                                                                                               >  6:103095/1‑147 (MQ=255)                                            ggCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGc                                                                                           <  5:277181/149‑1 (MQ=255)                                                   gCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAAcc                                                                                     <  3:109467/148‑1 (MQ=255)                                                             gCTGTGGCAGGAAGCGCAGATCGATCAGCTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGGGCCCCACCGCTGAtgtgtg                                                                          >  1:212620/1‑149 (MQ=255)                                                               agccgggctgaccggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagaccTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGcc                                                                        <  4:341752‑M1/64‑1 (MQ=255)                                                                gggccAGGAAGCGCATCTCGATCAGCGACTCGCCCCCGGTGCCGTTGAGTTGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGccc                                                                       <  4:276724/145‑1 (MQ=37)                                                                   gCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGAGGGTAAACCCGCTCCTACGAAGGGCTGAGCCCACCCTCTGATGTGTGccccat                                                                    >  7:206116/1‑147 (MQ=255)                                                                      ggAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTa                                                                 <  1:304618/149‑1 (MQ=255)                                                                      ggAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTa                                                                 <  5:103095/149‑1 (MQ=255)                                                                       gAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAg                                                                >  2:111148/1‑149 (MQ=255)                                                                           cggtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagaccTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGc                                                            >  3:341752‑M1/74‑149 (MQ=255)                                                                             gtcaggcactgggcgaagcactcaaaggtgaacggctgaaagcgctcgaggcttaccagcgcggttagaccTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                          >  7:118624‑M1/72‑149 (MQ=255)                                                                             gaGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                          <  1:153554/148‑1 (MQ=255)                                                                             cAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCgg                                                          <  5:2798/149‑1 (MQ=255)                                                                               gatcgatcAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGt                                                        <  1:111148/149‑1 (MQ=255)                                                                                atcgatcAGGTACTGGCCCCCGTGGCCTTTGAGTGGTGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCCACCTCTGATGTGTGCCCCCTGTAGGAGCGGGtt                                                       >  6:273784/1‑149 (MQ=255)                                                                                          tACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTAAACCcgctcc                                             <  2:219190/149‑4 (MQ=255)                                                                                            cTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAaga                                           <  5:271220/149‑1 (MQ=255)                                                                                                          cTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTAccc                                                  <  7:324428/128‑1 (MQ=255)                                                                                                                 tGGCGCGGGTTGCAGTTGACGCCCGCTGGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCgcgc                      <  6:343303/149‑1 (MQ=255)                                                                                                                   gcgcGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGACGGTAGGTCTAACCGCGCTg                    >  1:242846/1‑149 (MQ=255)                                                                                                                            gctgTTCACGCCCGCTTGAGCCTTTAGCGGCCTCTTCGCGGTTAACCCCGCTCCTACGAGGGGCTGAGCCCAACCTTTGATGTGTCCCCCCTGATGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCt            <  2:242846/145‑1 (MQ=37)                                                                                                                                     gCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCttt  >  5:172200/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                      GCCGCTGTCGTTGCTGGCGCCCGACCTGGTGCATCCGGGTGTGGGCAAGTGCATGGCGCAGCTGTGGCAGGAAGCGCAGATCGATCAGGTACTGGCCCCCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTT  >  NC_002947/478111‑478391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.