New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	478258 =	38 (0.630)	3 (0.050)	3/260	NT	7.7%	intergenic (+6/+104)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478359 =	35 (0.590)					intergenic (+107/+3)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

TGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATCG  >  NC_002947/478223‑478503                                                                                                                                            |                                                                                                                                                 tGGCGCGGGTTGCAGTTGACGCCCGCTGGAGCCTGTATCGGCCTCTTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCgcgc                                                                                                                                      <  6:343303/149‑1 (MQ=255)   gcgcGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGACGGTAGGTCTAACCGCGCTg                                                                                                                                    >  1:242846/1‑149 (MQ=255)            gctgTTCACGCCCGCTTGAGCCTTTAGCGGCCTCTTCGCGGTTAACCCC‑GCTCCTACGA‑GGGGCTGAGCCCAACCTTTGATGTGTCCCCCCTGATGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCt                                                                                                                            <  2:242846/145‑1 (MQ=37)                     gCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCttt                                                                                                                  >  5:172200/1‑149 (MQ=255)                                   tttacGGCCTGTTGGCGGGTAAACCC‑TCTCCAACCA‑CGGGCTTACCCCAACCTCTTATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAATAGGCCGGTATGTCTAACCGCGCTTGTAAGCCTCGAGCGCTTTCAGCCGTTCACCtt                                                                                                    <  2:242263/145‑1 (MQ=37)                                     ATCGGCCTCTTCGCGGGTAAACCC‑GCTCCGACGAGCGGGCTGAGCCCAAACTATGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTATGCGACGAGCGGTTTCAGCCGTTCACCttt                                                                                                   <  1:242263‑M1/149‑1 (MQ=255)                                        ggCCTCTTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGt                                                                                               <  6:172200/149‑1 (MQ=255)                                             ctTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTc                                                                                          >  6:105178/1‑149 (MQ=255)                                              ttCGCGGGTAAACCC‑GCTCCTACGA‑CCGGCGGAGCCCCACCTGAGATGTGTGCCCCCGGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTTGGTCTAAACCCGCGGGTAAGCCTCGAGCGCGTTCAGCCGGTCACCTTTGAGTGCTTCg                                                                                         >  4:144441/1‑149 (MQ=37)                                                cgcgGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGcc                                                                                       >  6:194982/1‑149 (MQ=255)                                                 gcgGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAg                                                                                                <  8:109608/139‑1 (MQ=255)                                                 gcgGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAg                                                                                                >  7:109608/1‑139 (MQ=255)                                                   gggTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAg                                                                                    >  6:152827/1‑149 (MQ=255)                                                     gTAAACCCGGCTCCTCGGA‑AGGGCTTAGCCCAACCTCTGTTGGGTGCCCCCTGTTGTCGG‑GGGTTAACCGGCGAAGAGGCCGGTAGGTCTAACCGCGCTGTTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGt                                                                                   <  8:206116/149‑1 (MQ=255)                                                              ccgctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgataGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGAc                                                                            >  7:118624‑M2/79‑149 (MQ=255)                                                                gctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgataGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCg                                                                          >  3:341752‑M2/77‑149 (MQ=255)                                                                  cTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGt                                                                        >  7:118290/1‑147 (MQ=255)                                                                     cga‑cgGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGcc                                                                   >  5:39146/1‑149 (MQ=255)                                                                            ggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgataGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCt                                                              <  4:341752‑M2/85‑1 (MQ=255)                                                                             ctcaccccAACCTCTGATGTGTCCCCCCTTTAGCAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTg                                                            <  3:144441/144‑1 (MQ=255)                                                                                  cccAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCAcc                                                        >  1:328152/1‑148 (MQ=255)                                                                                  cccAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCAcc                                                        >  8:280963/1‑148 (MQ=255)                                                                                   ccAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCAGGTAGGTCAAACCGCGCTCGTAAGCCTCGAGCGCTATCAGCCGATCACCTATGAGTGCTTCGCCCAGTGCCTGCGAGGTCAGCCCGTCATCCACCaa                                                      >  8:71720/1‑149 (MQ=37)                                                                                    cAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAAc                                                     <  2:328152/149‑1 (MQ=255)                                                                                    cAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAAc                                                     >  6:208201/1‑149 (MQ=255)                                                                                         tctGATGTGTGCCCCCTGTAGGAGCGGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCt                                                 >  1:22488/1‑149 (MQ=255)                                                                                           tGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTc                                               >  7:44166/1‑148 (MQ=255)                                                                                                    cccccTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                                   >  4:148658/1‑87 (MQ=255)                                                                                                    cccccTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCttt                                                                                                   <  3:148658/87‑1 (MQ=255)                                                                                                          gTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTcgcg                               >  5:205033/1‑149 (MQ=255)                                                                                                              gAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGcgccgc                           >  1:301146/1‑149 (MQ=255)                                                                                                                           ccGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCtt                                                >  4:144867/1‑116 (MQ=255)                                                                                                                           ccGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCtt                                                <  3:144867/116‑1 (MQ=255)                                                                                                                           ccGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGcc               <  5:208201/149‑1 (MQ=255)                                                                                                                           ccGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGCCTTGCACCAACGGCTTCACATCCACCGATCGCGCCGCCGCTGCTgcgc                >  6:51090/1‑148 (MQ=255)                                                                                                                            cgcgAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTc                                  >  8:221434/1‑129 (MQ=255)                                                                                                                              cgAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTg                                                            <  5:96363/101‑1 (MQ=255)                                                                                                                              cgAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTg                                                            >  6:96363/1‑101 (MQ=255)                                                                                                                               gAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGc           <  8:118290/149‑1 (MQ=255)                                                                                                                                        ggTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGTCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATCg  <  5:51090/149‑1 (MQ=255)                                                                                                                                        ggTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATCg  <  6:205033/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                 TGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCC‑GCTCCTACGA‑CGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGC‑GGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATCG  >  NC_002947/478223‑478503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.