New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	594771 =	40 (0.660)	4 (0.070)	4/242	NT	8.0%	intergenic (‑10/+117)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease
	?	NC_002947	594856 =	55 (1.000)					intergenic (‑95/+32)	PP_0505/PP_0506	hypothetical protein/ABC transporter permease

TGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGC  >  NC_002947/594626‑594918                                                                                                                                                     |                                                                                                                                                    tGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTc                                                                                                                                                  >  4:164365/1‑149 (MQ=255)  ccatgaatggaccttgctggctatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCt                                                                                                                                                    <  6:141554‑M1/2‑1 (MQ=255)   catgaatggaccttgctggctatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCtt                                                                                                                                                   <  3:332374‑M1/3‑1 (MQ=255)     gTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCgg                                                                                                                                              <  6:357621/149‑1 (MQ=255)     gTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCgg                                                                                                                                              <  2:55435/149‑1 (MQ=255)       aatggaccttgctggctatcatcctgggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctgggtgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTcgc                                                                                                                                                >  2:326342‑M1/143‑148 (MQ=255)             gcgcCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGACGGCCTCTTCGCGGGCATGccc                                                                                                                                      >  5:58416/1‑149 (MQ=255)                  aGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTcc                                                                                                                                 >  8:80493/1‑149 (MQ=255)                       tgGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                            <  6:58416/149‑1 (MQ=255)                                gggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTcgc                                                                                                                                                <  1:189603‑M1/6‑1 (MQ=255)                                gggggccgcgttgctgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTcgc                                                                                                                                                >  2:189603‑M1/118‑123 (MQ=255)                                           cTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAg                                                                                                        >  3:146988/1‑149 (MQ=255)                                           cTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAg                                                                                                        >  7:101047/1‑149 (MQ=255)                                              tgatgggcagcgtgccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAg                                                                                                        <  5:238652‑M1/46‑1 (MQ=255)                                              cAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGcac                                                                                                                   >  3:159410/1‑135 (MQ=255)                                              cAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGcac                                                                                                                   <  4:159410/135‑1 (MQ=255)                                                 ggATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTg                                                                                                                      >  3:22250/1‑129 (MQ=255)                                                 ggATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTg                                                                                                                      <  4:22250/129‑1 (MQ=255)                                                  gATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATTCCCCCAGCCACAGGTAATGCACAAGGAACAAAACcggcgg                                                                                                 >  2:271441/1‑149 (MQ=255)                                                  gATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCCGCCTCTTCTCGGGCATGCCCGCTACCACAGGTACTTCACAAGCTCCAAATCCTGCgg                                                                                                 >  8:277313/1‑149 (MQ=255)                                                    tCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAACGCCTGCgggg                                                                                               >  8:352308/1‑149 (MQ=255)                                                        tGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTcc                                                                                           <  4:358229/149‑1 (MQ=255)                                                           gggCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAGTGAGAGAAAGGGCATAGCCGGCCACTTCGCGCGCATCCCCGCTCCCACAGGAACTGCACAAGCGACAAACCCTGCGCGGCTca                                                                                           >  1:118190/1‑148 (MQ=255)                                                            ccggcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTccc                                                                                          <  5:256473‑M1/60‑1 (MQ=255)                                                              ccAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTgg                                                                                     <  3:164365/149‑1 (MQ=255)                                                              ccAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTgg                                                                                     <  3:327546/149‑1 (MQ=255)                                                               gcgtggcgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCtgt                                                                                       >  6:256473‑M1/87‑149 (MQ=255)                                                                     cgggcttaccggcaatcgctggctgacggcctgtccatacacctctgagtgcgcgtaatgatcaaacacctcaccgcctgCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGc                                                                                 >  6:238652‑M1/81‑149 (MQ=255)                                                                          cTTGGGTGCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCACAGGGAGccccgca                                                                           <  2:304886/147‑7 (MQ=38)                                                                                ttCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACt                                                                                                                       <  4:85606/97‑1 (MQ=255)                                                                                         ccATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCgg                                                          >  6:171391/1‑149 (MQ=255)                                                                                             agagGCAGCGCTACCAGCAACAGCAACGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTGCGCGGGCATGCCCGCGCCCACCGGGACGGCACAAGCTCCAACGCCTGCGGGGCTCCCTGGGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAg                                                      <  3:234824/149‑1 (MQ=255)                                                                                              gagGCTTCGCTACCACCAACTGCATGGCTCG‑‑‑CAGCATGTGCATGGCGGGCCTCTTGGGGGGCATGCCGGCTCCCACTGGTACTGCACAAGCTCCAAAGCCTGCGGGGGTCCCTGTGGGTGGGGGGGTGCCCGCGAAGCAGGCGGTGAg                                                      <  8:101047/148‑1 (MQ=255)                                                                                                     cGCAACCAGCAACCGCAAGGCCAG‑‑‑CAGCATGGGCATGGCCGGCCTCTTCGCGGGCAGGCCCGCTCCCACCGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGa                                              <  7:220061/149‑1 (MQ=38)                                                                                                      gCTACCCGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACACCCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGAt                                             <  7:80493/149‑1 (MQ=255)                                                                                                            agcaacagcaaGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTAc                                       >  7:188046/1‑149 (MQ=255)                                                                                                             gcaacagcaaGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTAcg                                      >  4:353476/1‑149 (MQ=255)                                                                                                              caacagcaaGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGTCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTAcgc                                     >  5:49097/1‑149 (MQ=255)                                                                                                                acagcaaGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTAcgcg                                    >  6:383458/1‑148 (MQ=255)                                                                                                                  agcaaGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCAc                                 >  5:342591/1‑149 (MQ=255)                                                                                                                     aaGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACt                                >  6:198272/1‑147 (MQ=255)                                                                                                                          cag‑‑‑cagCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGgt                         <  7:352308/149‑1 (MQ=255)                                                                                                                                cagcaTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCATGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTa                      >  8:266232/1‑149 (MQ=255)                                                                                                                                 agcaTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTAt                     <  5:383458/149‑1 (MQ=255)                                                                                                                                   caTGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGATACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATg                    >  1:77620/1‑148 (MQ=255)                                                                                                                                       gccctgcccGCCCCCTCCGCGGGCATGCCCGCCCCCACCGGCACGCCCCACGCTCCACCCCCTGCGGGGCCCCCGGGGGGCGGGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAg               <  8:162036/142‑1 (MQ=255)                                                                                                                                         cATTGCCGGCCTCTTCGCTGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAgg              <  4:118362/148‑1 (MQ=255)                                                                                                                                         cATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAg               >  7:162036/1‑147 (MQ=255)                                                                                                                                          aTTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGcc            >  6:71393/1‑149 (MQ=255)                                                                                                                                             gCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGt          >  1:62207/1‑148 (MQ=255)                                                                                                                                                    tctTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTcagccagc  >  5:141554/1‑149 (MQ=255)                                                                                                                                                     CTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTcagccagc  <  3:359920‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGTCGTGCAGCGGCGCCAGTTGTGGCGGGATGACCGGGGCACCTTCAGGGATCAGTGCGGGCCAGTCCAGCTCCTTGGGTTCGGCGGCCCATAGAGGCATCGCTACCAGCAACAGCAAGGCCAG‑‑‑CAGCATGTGCATTGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTACTGCACAAGCTCCAAAGCCTGCGGGGCTCCCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGGTGAGGTGTTTGATCATTACGCGCACTCAGAGGTGTATGGACAGGCCGTCAGCCAGC  >  NC_002947/594626‑594918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.