New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	875905 =	44 (0.730)	4 (0.070)	4/248	NT	8.6%	intergenic (‑14/+73)	PP_0760/PP_mr65	membrane protein/YybP‑YkoY
	?	NC_002947	875949 =	44 (0.780)					intergenic (‑58/+29)	PP_0760/PP_mr65	membrane protein/YybP‑YkoY

CGGCGATGATGCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGCATGGTGGGTCGCACGCGCCATGGTCTGTGGA  >  NC_002947/875759‑876052                                                                                                                                                   |                                                                                                                                                    ccgcgagcacccagctcgcccggtacgcgtcaacatacttggtccacagaccatggcgcgtgcgacccaccatgcacgcctgcatggagagatccgcatagacggatcgagggtttgacaagacctatgacacgcacaccttacccggg                                                                                                                                                   <  1:261240‑M1/3‑1 (MQ=255)   gcgATGATGCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGc                                                                                                                                                 <  1:70482/149‑1 (MQ=255)    cgagcacccagctcgcccggtacgcgtcaacatacttggtccacagaccatggcgcgtgcgacccaccatgcacgcctgcatggagagatccgcatagacggatcgagggtttgacaagacctatgacacgcacaccttacccGGGGCg                                                                                                                                                <  7:58744‑M1/6‑1 (MQ=255)     gatgatGCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCgg                                                                                                                                               >  3:81607/1‑149 (MQ=255)         atgCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTc                                                                                                                                            <  7:258235/148‑1 (MQ=255)          tgCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGa                                                                                                                                          >  2:245095/1‑149 (MQ=255)           gCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCggggaggc                                                                                                                                         >  3:6025/1‑144 (MQ=255)            ccGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGac                                                                                                                                         <  4:40749/148‑1 (MQ=255)               gCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACgg                                                                                                                                     <  4:187470/149‑1 (MQ=255)                   tgatCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTAt                                                                                                                                 <  4:351542/149‑1 (MQ=255)                      tCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGAAAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCTGGTCGACACGGCTATGac                                                                                                                              <  6:178864/149‑1 (MQ=255)                       cGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGac                                                                                                                              <  4:81607/148‑1 (MQ=255)                           gcgtcaacatacttggtccacagaccatggcgcgtgcgacccaccatgcacgcctgcatggagagatccgcatagacggatcgagggtttgacaagacctatgacacgcacaccttacccGGGGCGGGTCGACACGGCTATGACACGTa                                                                                                                         <  7:152116‑M1/29‑1 (MQ=255)                            aGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTAc                                                                                                                        <  1:245095/149‑1 (MQ=255)                             gggTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACa                                                                                                                       <  8:2278/149‑1 (MQ=255)                               gTTTGCGGACGAGGTCAGCGAGAATGAGTTCGATCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGTTAGCGGTGGTGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGc                                                                                                                     <  4:262527/149‑1 (MQ=255)                                 ttGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCt                                                                                                                   >  3:54575/1‑149 (MQ=255)                                    cGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTccc                                                                                                                >  6:69393/1‑149 (MQ=255)                                     ggAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTcccc                                                                                                               >  2:903/1‑149 (MQ=255)                                           gggCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTccccgccccg                                                                                                         <  4:54575/149‑1 (MQ=255)                                            ggCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCACGGCCAGGGCAACGATAGCGGTGGCGACCAACAGTGATTCCAGCATCAGCATTAGTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCGCCCCGCACCgg                                                                                                        >  6:216937/1‑149 (MQ=255)                                            ggCAGCGAGAATGAGTGCGAGCAGTTGAGTCTTGTCGCCGATATCGGCCAGGGCAACGAAAGCGGTGTGGACAAACAGTGATTCCAGCATCAGGATTCCTACGGGGTCGGGACGACACGGATATCACCAGAACAGCCTCCACGCCCCgg                                                                                                        >  6:222175/1‑149 (MQ=255)                                             cacagaccatggcgcgtgcgacccaccatgcacgcctgcatggagagatccgcatagacggatcgagggtttgacaagacctatgacacgcacaccttacccGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCgg                                                                                                        >  8:152116‑M1/103‑148 (MQ=255)                                              cAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCTGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGt                                                                                                      <  3:21276/149‑1 (MQ=255)                                               aGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGt                                                                                                      >  8:197547/1‑148 (MQ=255)                                                       tGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGc                                                                                             <  7:197547/149‑1 (MQ=255)                                                         aGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCgt                                                                                           <  2:218830/149‑1 (MQ=255)                                                         aGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCgt                                                                                           <  1:903/149‑1 (MQ=255)                                                              gcgacccaccatgcacgcctgcatggagagatccgcatagacggatcgagggtttgacaagacctatgacacgcacaccttacccGGGGCGGGTCGACACGGCTATGACACGTACAGCCTcccc                                                                                                               >  2:203814‑M1/86‑124 (MQ=255)                                                              gcgacccaccatgcacgcctgcatggagagatccgcatagacggatcgagggtttgacaagacctatgacacgcacaccttacccGGGGCGGGTCGACACGGCTATGACACGTACAGCCTcccc                                                                                                               <  1:203814‑M1/39‑1 (MQ=255)                                                                          cTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGt                                                                                  <  1:171053/141‑1 (MQ=255)                                                                          cTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGt                                                                                  >  2:171053/1‑141 (MQ=255)                                                                           ttGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCaaa                                                                         >  1:2760/1‑149 (MQ=255)                                                                                gCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCgt                                                                                           <  4:65125/126‑1 (MQ=255)                                                                                gCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCgt                                                                                           >  3:65125/1‑126 (MQ=255)                                                                                gCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCaaa                                                                         >  5:228283/1‑144 (MQ=255)                                                                                gCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCaaa                                                                         <  6:228283/144‑1 (MQ=255)                                                                                gCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTc                                                                    >  2:119686/1‑149 (MQ=255)                                                                                     tctcGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATcc                                                               >  1:142844/1‑149 (MQ=255)                                                                                         ggCCACGGCAACGCTAGCGGTGGGTACCAACCGTGATTCCCGCATCAGTCTTCCTAAGGGGGCGGGTCGACACGGCTATGACACCTACAGCCTCCCCGCCCCGGGTAACGGGTGCGTGTCATAGGTCTTGTCAAACCCTCGATcc                                                               <  4:44229/145‑1 (MQ=255)                                                                                                  aaCGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGAtc                                                  >  5:190988/1‑149 (MQ=255)                                                                                                                    cAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGgtgt                                   <  6:235824/146‑1 (MQ=255)                                                                                                                    cAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGc                                 >  4:232586/1‑148 (MQ=255)                                                                                                                    cAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGc                                 <  3:232586/148‑1 (MQ=255)                                                                                                                    cAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGAGt                                   >  5:235824/1‑146 (MQ=255)                                                                                                                      aCAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCACGCCTGCAtg                              >  7:41132/1‑149 (MQ=255)                                                                                                                          tGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCACGCCTGCAtggaga                          <  8:41132/149‑4 (MQ=255)                                                                                                                           gATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGTCACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGCAtggtgg                          <  5:216937/148‑1 (MQ=255)                                                                                                                           gATTCCAGCATCAGGATTACTAAGGGGGCGGGGCGACACGTCTATGACACGTACAGACTCCCCGCCCCGGGTAAGGGGGGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGCAtggtgg                          <  5:222175/148‑1 (MQ=255)                                                                                                                                 aGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCGCTCCATGCAGGCGTGCATGGGGGGgcgccc                   >  8:236151/1‑147 (MQ=255)                                                                                                                                 aGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGGCTATGCGGATCTCTCCATGCAGGCGGGCATGGTGGGTCGCAc                   >  8:233899/1‑149 (MQ=255)                                                                                                                                              cTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGCATGGTGGGTCGCACGCGCCATGGTCtg      >  6:370982/1‑149 (MQ=255)                                                                                                                                               tACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCACGCCTGCAtgga                            <  7:91783/126‑2 (MQ=255)                                                                                                                                               tACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCACGCCTGCAtgga                            >  8:91783/1‑125 (MQ=255)                                                                                                                                                  gggggCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGCATGGTGGGTCGCACGCGCCATGGTCTGTGGa  >  3:208224/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGGCGATGATGCCGGCGATGATCGGCCAGGGTTTGCGGAAGCGGGCAGCGAGAATGAGTGCGAGCAGTTGCGTCTTGTCGCCGATCTCGGCCAGGGCAACGATAGCGGTGGGGACCAACAGTGATTCCAGCATCAGGATTCCTACGGGGGCGGGTCGACACGGCTATGACACGTACAGCCTCCCCGCCCCGGGTAAGGTGTGCGTGTCATAGGTCTTGTCAAACCCTCGATCCGTCTATGCGGATCTCTCCATGCAGGCGTGCATGGTGGGTCGCACGCGCCATGGTCTGTGGA  >  NC_002947/875759‑876052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.