New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1171718 =	42 (0.700)	4 (0.070)	4/248	NT	10.3%	coding (1335/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
	?	NC_002947	1171779 =	30 (0.530)					coding (1274/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit

CCGGTTTGTTCAGTGTGCGGGTGATGTAGCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTG  >  NC_002947/1171573‑1171864                                                                                                                                                   |                                                                                                                                                   gccatgcgcgaggtgctcaaggaccgtcgccagcggttccaggcccagttgcagacactgcaggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGAc                                                                                                                                                  >  1:276952‑M1/147‑149 (MQ=255)       tGTTCAGTGTGCGGGTGATGTAGCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCAc                                                                                                                                            <  5:4101/148‑1 (MQ=255)                  cGGGTGATGTAGCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGcc                                                                                                                                >  7:276124/1‑149 (MQ=255)                        aTGTAGCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGtt                                                                                                                          >  5:296800/1‑149 (MQ=255)                          gTAGCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCTACCCGCACCAGCAACTCGCCTTCGtt                                                                                                                          >  4:31365/1‑147 (MQ=255)                           ctgCTGGCCGGCGGCGCC‑CAGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCa                                                                                                                        <  6:224263/146‑1 (MQ=255)                             gCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCa                                                                                                                                          >  2:198305/1‑128 (MQ=255)                             gCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAggc                                                                                                                     <  5:383398/149‑1 (MQ=255)                                ggCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAggcggg                                                                                                                  >  3:165267/1‑149 (MQ=255)                                   cTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGgcgggcgg                                                                                                               >  4:271373/1‑149 (MQ=255)                                   cTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGgcgggcgg                                                                                                               >  3:111228/1‑149 (MQ=255)                                        gcgcCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAg                                                                                                           >  4:327465/1‑149 (MQ=255)                                          gccgccGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGc                                                                                                         >  1:16993/1‑149 (MQ=255)                                              ccgGCCAGCAGCAGCAGGGAAAGGGCAAGCCGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTg                                                                                                     <  2:248067/149‑1 (MQ=255)                                               agttgcagacactgcaggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTgg                                                                                                    <  5:137086‑M1/49‑1 (MQ=255)                                                  ccAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCa                                                                                                 <  5:100472/149‑1 (MQ=255)                                                    cagacactgcaggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGAccc                                                                                                                                                <  7:88273‑M1/5‑1 (MQ=255)                                                    cagacactgcaggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGAccc                                                                                                                                                >  8:88273‑M1/96‑100 (MQ=255)                                                     gcagcagcagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGGATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCTCCAGCAACTCGCCGTCGTTCCGGCGGGCGGTCAGGCGATGGCCAtag                                                                                              >  2:199298/1‑147 (MQ=255)                                                        ggagcagGGATATGGCAAGCAGGGGCGCGAGGACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCgg                                                                                           <  4:81750/147‑1 (MQ=255)                                                        gcagcagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCgg                                                                                           <  1:250286/149‑1 (MQ=255)                                                        gcagcagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCgg                                                                                           >  2:250286/1‑149 (MQ=255)                                                         actgcaggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCggg                                                                                          >  8:352760‑M1/91‑149 (MQ=255)                                                          ctgcaggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGt                                                                                         >  6:137086‑M1/90‑149 (MQ=255)                                                          atgatggAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGt                                                                                         <  2:347029/144‑1 (MQ=255)                                                            cagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCt                                                                                       <  4:37767/149‑1 (MQ=255)                                                            cagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCGTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCt                                                                                       >  8:290369/1‑149 (MQ=255)                                                             caggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCt                                                                                       >  6:384046‑M1/87‑148 (MQ=255)                                                               ggAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGc                                                                                             <  6:52079/140‑1 (MQ=255)                                                               ggAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGc                                                                                             >  5:52079/1‑140 (MQ=255)                                                                       cAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTg                                                                            <  4:159867/149‑1 (MQ=255)                                                                                       cACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCtt                                                            >  6:204998/1‑149 (MQ=255)                                                                                        aCGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTg                                                           <  8:276124/149‑1 (MQ=255)                                                                                         cgcgGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGc                                                          <  6:296800/149‑1 (MQ=255)                                                                                              ggCATGTGGCAGTCCAGTAGGGAGAGCGTGACCGGGGTCAGGGGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCGATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATc                                                     <  1:199298/149‑1 (MQ=255)                                                                                               gCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATcc                                                    <  8:131247/149‑1 (MQ=255)                                                                                               gCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATcc                                                    <  3:271373/149‑1 (MQ=255)                                                                                                cATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCa                                                   <  2:277195/149‑1 (MQ=255)                                                                                                 aTGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAAt                                                                       <  3:224415/128‑1 (MQ=255)                                                                                                 aTGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAAt                                                                       >  4:224415/1‑128 (MQ=255)                                                                                                        aGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAAt                                            <  4:111228/148‑1 (MQ=255)                                                                                                        aGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATg                                           >  8:71036/1‑149 (MQ=255)                                                                                                                  tGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCAc                                 <  5:204998/149‑1 (MQ=255)                                                                                                                      agGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGc                             >  5:39575/1‑149 (MQ=255)                                                                                                                        ggTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCa                           <  3:360051/149‑1 (MQ=255)                                                                                                                                    cAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCGGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCg               <  7:290278/149‑1 (MQ=255)                                                                                                                                     aGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCg               <  3:327465/148‑1 (MQ=255)                                                                                                                                       gtggtTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGAc            >  4:181740/1‑149 (MQ=255)                                                                                                                                           ttGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGac        <  4:165267/149‑1 (MQ=255)                                                                                                                                              tCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCATAGTGGCCAGCGGACTGaccac     >  1:270112/1‑149 (MQ=255)                                                                                                                                                ttCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCt   >  1:13083/1‑149 (MQ=255)                                                                                                                                                ttCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCt   >  8:342798/1‑149 (MQ=255)                                                                                                                                                ttCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCt   >  5:378316/1‑149 (MQ=255)                                                                                                                                                 tCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTg  >  6:139739/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CCGGTTTGTTCAGTGTGCGGGTGATGTAGCTGGCCTG‑GGCGCCGCCGGCCAGCAGCAGCAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTG  >  NC_002947/1171573‑1171864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.