New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1171718 =	42 (0.700)	4 (0.070)	4/248	NT	10.3%	coding (1335/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit
	?	NC_002947	1171779 =	30 (0.530)					coding (1274/1380 nt)	xseA	exodeoxyribonuclease 7 large subunit

CAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTGGCGACGGTCCTTGAGCACCTCGCGCATGGC  >  NC_002947/1171631‑1171924                                                                                                                                                     |                                                                                                                                                  cagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCt                                                                                                                                                   <  4:37767/149‑1 (MQ=255) cagGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCGTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCt                                                                                                                                                   >  8:290369/1‑149 (MQ=255)  caggtggtcagtccgctggccactctggcccgtggatacagcattttgctggatgagcaaggccaggccattcgcagcgccgaacaGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCt                                                                                                                                                   >  6:384046‑M1/87‑148 (MQ=255)            cAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTg                                                                                                                                        <  4:159867/149‑1 (MQ=255)                            cACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCtt                                                                                                                        >  6:204998/1‑149 (MQ=255)                             aCGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTg                                                                                                                       <  8:276124/149‑1 (MQ=255)                              cgcgGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGc                                                                                                                      <  6:296800/149‑1 (MQ=255)                                   ggCATGTGGCAGTCCAGTAGGGAGAGCGTGACCGGGGTCAGGGGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCGATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATc                                                                                                                 <  1:199298/149‑1 (MQ=255)                                    gCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATcc                                                                                                                <  3:271373/149‑1 (MQ=255)                                    gCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATcc                                                                                                                <  8:131247/149‑1 (MQ=255)                                     cATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCa                                                                                                               <  2:277195/149‑1 (MQ=255)                                      aTGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAAt                                                                                                                                   <  3:224415/128‑1 (MQ=255)                                      aTGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAAt                                                                                                                                   >  4:224415/1‑128 (MQ=255)                                             aGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAAt                                                                                                        <  4:111228/148‑1 (MQ=255)                                             aGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATg                                                                                                       >  8:71036/1‑149 (MQ=255)                                                       tGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCAc                                                                                             <  5:204998/149‑1 (MQ=255)                                                           agGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGc                                                                                         >  5:39575/1‑149 (MQ=255)                                                             ggTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCa                                                                                       <  3:360051/149‑1 (MQ=255)                                                                         cAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCGGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCg                                                                           <  7:290278/149‑1 (MQ=255)                                                                          aGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCg                                                                           <  3:327465/148‑1 (MQ=255)                                                                            gtggtTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGAc                                                                        >  4:181740/1‑149 (MQ=255)                                                                                ttGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGac                                                                    <  4:165267/149‑1 (MQ=255)                                                                                   tCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCATAGTGGCCAGCGGACTGaccac                                                                 >  1:270112/1‑149 (MQ=255)                                                                                     ttCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCt                                                               >  5:378316/1‑149 (MQ=255)                                                                                     ttCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCt                                                               >  8:342798/1‑149 (MQ=255)                                                                                     ttCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCt                                                               >  1:13083/1‑149 (MQ=255)                                                                                      tCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTg                                                              >  6:139739/1‑149 (MQ=255)                                                                                       agacccgcaatggccaacgcctgaccgcccgcctgaacgaaggcgagttgctggtgcgggtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTg                                                              >  6:384046‑M2/63‑148 (MQ=255)                                                                                         acccgcaatggccaacgcctgaccgcccgcctgaacgaaggcgagttgctggtgcgggtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAg                                                           >  6:137086‑M2/61‑149 (MQ=255)                                                                                          cccgcaatggccaacgcctgaccgcccgcctgaacgaaggcgagttgctggtgcgggtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAgt                                                          >  8:352760‑M2/60‑149 (MQ=255)                                                                                           CCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCa                                                            <  8:300945‑M1/146‑1 (MQ=255)                                                                                           CCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCa                                                            >  7:300945‑M1/1‑146 (MQ=255)                                                                                           CCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAgtg                                                         <  6:10448‑M1/149‑1 (MQ=255)                                                                                           CCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAgtg                                                         <  5:110160‑M1/149‑1 (MQ=255)                                                                                             GCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTg                                                                                                    <  2:314618‑M1/104‑1 (MQ=255)                                                                                                    ccaacgcctgaccgcccgcctgaacgaaggcgagttgctggtgcgggtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACt                                                <  5:137086‑M2/100‑1 (MQ=255)                                                                                                     aaCTCGCCTTCGTTCAGGCGGGCGGGCAGGCGGTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTg                                               <  7:290369/149‑1 (MQ=255)                                                                                                          gCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGc                                            <  7:8376/147‑1 (MQ=255)                                                                                                                gTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTc                                                                                                                                               >  1:122744/1‑42 (MQ=255)                                                                                                                gTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTc                                                                                                                                               <  2:122744/42‑1 (MQ=255)                                                                                                                     ggcgggcgGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTgg                               <  3:181740/149‑1 (MQ=255)                                                                                                                                 ggCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTgg                               <  7:261160/137‑1 (MQ=255)                                                                                                                                 ggCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTgg                               >  8:261160/1‑137 (MQ=255)                                                                                                                                   cGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTGGCGACGGTCCTTGAg                 <  7:71036/149‑1 (MQ=255)                                                                                                                                          cATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTGGCGACGGTCCTTGAGCACCTcg          >  8:207068/1‑149 (MQ=255)                                                                                                                                                gggtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTg                                                     <  7:88273‑M2/95‑1 (MQ=255)                                                                                                                                                gggtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTg                                                     >  8:88273‑M2/6‑100 (MQ=255)                                                                                                                                                  gtcTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTGGCGACGGTCCTTGAGCACCTCGCGCATGGc  >  1:276952‑M2/4‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CAGGGAAAGGGCAAGCAGGGGCGCGAGCACGCGGGGCATGTGTCAGTCCAGTAGTGAGAGGGTGACCGGGGTCAGGTGGTTGTCTTCGACCCGCACCAGCAACTCGCCTTCGTTCAGGCGGGCGGTCAGGCGTTGGCCATTGCGGGTCTGTTCGGCGCTGCGAATGGCCTGGCCTTGCTCATCCAGCAAAATGCTGTATCCACGGGCCAGAGTGGCCAGCGGACTGACCACCTGCAGTGTCTGCAACTGGGCCTGGAACCGCTGGCGACGGTCCTTGAGCACCTCGCGCATGGC  >  NC_002947/1171631‑1171924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.