New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2697776 =	39 (0.650)	4 (0.070)	4/252	NT	10.0%	coding (521/1149 nt)	PP_2364	hypothetical protein
	?	NC_002947	2697837 =	35 (0.610)					coding (460/1149 nt)	PP_2364	hypothetical protein

CAGGTGGCCGAGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTCGATCAGCTGG  >  NC_002947/2697628‑2697919                                                                                                                                                     |                                                                                                                                                gtgaaggctgaacaggaccagatctggttcgcctacttcgagccctacccgcgtgcccgccacaaccagctgatcgaacgtgcctgccaactcccgggggtcgagttgctggccagcggccgcagtgtccagggccgtgatatccccct                                                                                                                                                 <  3:113000‑M1/1‑1 (MQ=255)     tGGCCGAGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGTAtgctg                                                                                                                                             <  7:301541/149‑1 (MQ=255)       gCCGAGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATgctgct                                                                                                                                           >  4:329623/1‑149 (MQ=255)         cGAGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTgg                                                                                                                                         <  7:212411/149‑1 (MQ=255)         cGAGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTgg                                                                                                                                         <  5:316617/149‑1 (MQ=255)           aGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTggg                                                                                                                                        >  5:145888/1‑148 (MQ=255)               aGGCGCCGTCGGGGTTCATGTTGGGGAGCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATc                                                                                                                                   <  7:241887/149‑1 (MQ=255)                  cgcCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGGCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGc                                                                                                                                <  4:78244/149‑1 (MQ=255)                     ccgatctgTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCca                                                                                                                              <  5:378792/141‑1 (MQ=255)                             ttCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCca                                                                                                                              >  6:378792/1‑140 (MQ=255)                                 tGTTGGGTATCAGGTAAAGGGCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGTTGCTGCTGGGCAATCAGCCACAgcttgcgcttg                                                                                                                 <  3:44691/149‑1 (MQ=255)                                       ggATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTAGGCAATCAGCCACAGCTTGCGCTTGCCTTCg                                                                                                           <  7:38340/149‑1 (MQ=255)                                        gATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCgg                                                                                                          >  5:366350/1‑149 (MQ=255)                                            aGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCCTTCGGCCATGTGCTCGCCCGGATGATGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGcccc                                                                                                      >  4:111849/1‑149 (MQ=255)                                              gTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGt                                                                                                    >  5:121424/1‑149 (MQ=255)                                               tAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTc                                                                                                   <  6:228761/149‑1 (MQ=255)                                                    gTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTg                                                                                              >  1:243620/1‑149 (MQ=255)                                                    gTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTg                                                                                              >  8:283883/1‑149 (MQ=255)                                                     tCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGc                                                                                             >  3:76701/1‑149 (MQ=255)                                                       ggCCTTGGACAGCAATTGCTCGACCACCGTTTCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGcc                                                                                            <  3:44257/148‑1 (MQ=255)                                                            ccacaaccagctgatcgaacgtgcctgccaactcccgggggtcgagttgctggccagcggccgcagtgtccagggccgtgatatcccccTGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCgcagc                                                                                      >  2:178091‑M1/90‑149 (MQ=255)                                                              acaaccagcggatcgaacgtgcctgccaactcccgggggtcgagttgctggccagcggccgcagtgtccagggccgtgatatcccccTGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGcagcag                                                                                    >  3:16567‑M1/88‑149 (MQ=255)                                                               ccAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAgg                                                                                   <  6:145888/149‑1 (MQ=255)                                                               caaccagctgatcgaacgtgcctgccaactcccgggggtcgagttgctggccagcggccgcagtgtccagggccgtgatatcccccTGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAgg                                                                                   >  1:350084‑M1/87‑149 (MQ=255)                                                               caaccagctgatcgaacgtgcctgccaactcccgggggtcgagttgctggccagcggccgcagtgtccagggccgtgatatcccccTGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAgg                                                                                   <  2:350084‑M1/63‑1 (MQ=255)                                                                cAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAggg                                                                                  <  6:366350/149‑1 (MQ=255)                                                                 aGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAgggg                                                                                 <  2:243620/149‑1 (MQ=255)                                                                 aGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAgggg                                                                                 <  6:121424/149‑1 (MQ=255)                                                                               caccGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCt                                                                   >  8:280568/1‑149 (MQ=255)                                                                                  cGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGa                                                                <  7:283883/149‑1 (MQ=255)                                                                                                 cAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTg                                                  <  1:280840/148‑1 (MQ=255)                                                                                                        tCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTg                                                                  <  6:321000/125‑1 (MQ=255)                                                                                                        tCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTg                                                                  >  5:321000/1‑125 (MQ=255)                                                                                                        tCGACCACGCCAGCCCTGACCCATTAGCCCATGCGCTCGCCCGCAGGCCCCCCGGCAACCACCCACAGCTTGCGCCTGCCTTCCGCACCCTCGCCTGCCCGCAGCAGGGGGATATCCCGGCCCTGGACACTGCGGCCGCTGGCCAGCaa                                          <  8:266120/149‑1 (MQ=255)                                                                                                                  cTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGAccccc                                >  5:37214/1‑149 (MQ=255)                                                                                                                    tCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCgg                              >  2:220105/1‑149 (MQ=255)                                                                                                                          aaCCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGtt                         <  5:119586/148‑1 (MQ=255)                                                                                                                                    ccATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGt              >  2:338530/1‑149 (MQ=255)                                                                                                                                    ccATCTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCATTCGGAACACTCTCCTGCCCGCAGAAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGt              >  5:260286/1‑149 (MQ=255)                                                                                                                                      aTGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTc            <  4:76701/149‑1 (MQ=255)                                                                                                                                          gCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTggca                     <  7:106936/136‑1 (MQ=255)                                                                                                                                          gCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTggca                     >  8:106936/1‑136 (MQ=255)                                                                                                                                            tCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTCGATCAg      >  2:163652/1‑149 (MQ=255)                                                                                                                                              gCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTCGATCAGCt    >  7:319814/1‑149 (MQ=255)                                                                                                                                              gCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTCGATCAGCt    >  4:113000/1‑149 (MQ=255)                                                                                                                                                ccGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTCGATCAGCTgg  >  1:271095/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                CAGGTGGCCGAGGAAGGCGCCGTCGGGGTTCATGTTGGGGATCAGGTAAAGGTCGGCCTTGGCCAGCAATTGCTCGACCACCGTATCGTTGGCCTGCAGGCGGTCGATCACGCCTTCCATGAACCATTCGGCCATGTGCTCGCCCGGATGCTGCTGGGCAATCAGCCACAGCTTGCGCTTGCCTTCGGCACCGTCGCCTGCCCGCAGCAGGGGGATATCACGGCCCTGGACACTGCGGCCGCTGGCCAGCAACTCGACCCCCGGGAGTTGGCAGGCACGTTCGATCAGCTGG  >  NC_002947/2697628‑2697919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.