New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2729599 =	47 (0.780)	3 (0.050)	3/248	NT	6.4%	coding (46/1044 nt)	PP_2392	MFS transporter
	?	NC_002947	2729650 =	43 (0.760)					coding (97/1044 nt)	PP_2392	MFS transporter

CTGGCGCAGCGGCCAGGTTTCCAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGC  >  NC_002947/2729456‑2729734                                                                                                                                                |                                                                                                                                         cTGGCGCAGCGGCCAGGTTTCCAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTg                                                                                                                                     >  5:351426/1‑149 (MQ=255) cTGGCGCAGCGGCCAGGTTTCCAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATCCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTg                                                                                                                                     >  6:286205/1‑149 (MQ=255)  tcaggccccatgccaggccggccgcagcccccgtgaaaaagcgcagcaccagggtcagcgtgttggagttcgacaaggccgtcagcccgttgaacagcacgaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTgg                                                                                                                                    >  3:32818‑M1/143‑149 (MQ=255)    gcgcAGCGGCCAGGTTTCCAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTggg                                                                                                                                   <  5:188330/148‑1 (MQ=255)                   ttCCAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGc                                                                                                                    >  8:95927/1‑148 (MQ=255)                    cggccgcagcccccgtgaaaaagcgcagcaccagggtcagcgtgttggagttcgacaaggccgtcagcccgttgaacagcacgaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCtt                                                                                                                                      >  2:177071‑M1/125‑129 (MQ=255)                    cggccgcagcccccgtgaaaaagcgcagcaccagggtcagcgtgttggagttcgacaaggccgtcagcccgttgaacagcacgaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCtt                                                                                                                                      <  1:177071‑M1/5‑1 (MQ=255)                      cAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATc                                                                                                                <  3:222084/149‑1 (MQ=255)                      cAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATc                                                                                                                <  4:102935/149‑1 (MQ=255)                            gCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTg                                                                                                          >  7:262627/1‑149 (MQ=255)                               gTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTg                                                                                                       <  8:34621/149‑1 (MQ=255)                                      gggAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGa                                                                                                >  6:363155/1‑149 (MQ=255)                                            cGATCATGCCGGGTGGTCTGCGCCGGCGGGGCTGCGCGACCCGCTCGCCGATGGCACGCACATCCGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAg                                                                                          <  2:336460/149‑1 (MQ=255)                                             gATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAgg                                                                                         <  8:191201/149‑1 (MQ=255)                                               gcaccagggtcagcgtgttggagttcgacaaggccgtcagcccgttgaacagcacgaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCt                                                                                       >  4:318732‑M1/98‑149 (MQ=255)                                                 aTGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTg                                                                                      <  4:204966/148‑1 (MQ=255)                                                             aTGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCCCGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCAGGTATCGGCGCCgg                                                                         >  7:109333/1‑149 (MQ=255)                                                              tGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGTCGTATGCCTTGGGCTCGTTACTGACCTCCATCCCGTTGGTGACGTTCACCCAAGTCTGGTATCGGCGCCggg                                                                        >  8:298283/1‑149 (MQ=255)                                                                  ggagttcgacaaggccgtcagcccgttgaacagcactaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGc                                                                                        <  6:359329‑M1/51‑1 (MQ=255)                                                                  ggagttcgacaaggccgtcagcccgttgaacagcactaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGc                                                                                        >  5:359329‑M1/79‑129 (MQ=255)                                                                     gcggGTATGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGtt                                                                 <  7:298283/149‑1 (MQ=255)                                                                      cggGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTg                                                                <  7:95927/149‑1 (MQ=255)                                                                      cggGTCTGCTCGACAAGATCGCCGATGGCATGCACTTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGCCCCAAGGCTGGTATCGGCGCCGGGCGCTGTTg                                                                <  5:365417/149‑1 (MQ=255)                                                                       gggTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGc                                                               >  8:49248/1‑149 (MQ=255)                                                                       gggTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGc                                                               >  1:153634/1‑149 (MQ=255)                                                                            tGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGc                                                           >  7:29879/1‑148 (MQ=255)                                                                             gCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGa                                                         >  4:153268/1‑149 (MQ=255)                                                                              cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGc                                                           <  3:162445/146‑1 (MQ=255)                                                                              cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGat                                                        >  8:239563/1‑149 (MQ=255)                                                                              cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGat                                                        >  3:157234/1‑149 (MQ=255)                                                                              cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGa                                                         >  6:252846/1‑148 (MQ=255)                                                                                 gACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGAc                                                                                                     <  2:250429/101‑1 (MQ=255)                                                                                  aCCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGatca‑tc                                                   <  5:220258/149‑1 (MQ=255)                                                                                      gATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCCTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCCATCA‑TCGGCt                                               >  8:64622/1‑149 (MQ=255)                                                                                           ccGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTg                                          <  6:42687/149‑1 (MQ=255)                                                                                                 gCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGtt                                     <  2:153634/148‑1 (MQ=255)                                                                                                 gCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTc                                    <  7:239563/149‑1 (MQ=255)                                                                                                    tGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAAc                                 <  8:244132/149‑1 (MQ=255)                                                                                                      cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCTCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACg                                <  5:363155/148‑1 (MQ=255)                                                                                                      cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACgg                               <  3:153268/149‑1 (MQ=255)                                                                                                      cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACg                                <  7:49248/148‑1 (MQ=255)                                                                                                       acaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACggg                              <  5:286205/149‑1 (MQ=255)                                                                                                         cccAGCCATGGCCTGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                            >  1:134617/3‑149 (MQ=255)                                                                                                         aTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                            >  8:35820/1‑149 (MQ=255)                                                                                                         aTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                            >  2:1505/1‑149 (MQ=255)                                                                                                          tCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                            >  4:96751/1‑148 (MQ=255)                                                                                                               cAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGc                      <  8:262627/149‑1 (MQ=255)                                                                                                                aGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGTGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGcc                     <  8:109333/149‑1 (MQ=255)                                                                                                                            ggCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc         <  3:265961/149‑1 (MQ=255)                                                                                                                            ggCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTc          >  1:25004/1‑148 (MQ=255)                                                                                                                             gCAATTGGGCACGGCGTTATCCTTGGGCGCGTTACTGACCGCCATCCCGTTGGTGACGTTTCCCCAAGGCTGGTATCGGCGCCGGGGGCTGGTGGTGGGGATCATTCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc         <  1:72099/149‑1 (MQ=255)                                                                                                                               aaTGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAac      <  3:96751/149‑1 (MQ=255)                                                                                                                                   ggTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGc  <  2:134617/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                         CTGGCGCAGCGGCCAGGTTTCCAGCTTGCCGTTGCTGGGGAAGCGATAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGC  >  NC_002947/2729456‑2729734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.