New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2729599 =	47 (0.780)	3 (0.050)	3/248	NT	6.4%	coding (46/1044 nt)	PP_2392	MFS transporter
	?	NC_002947	2729650 =	43 (0.760)					coding (97/1044 nt)	PP_2392	MFS transporter

TAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCTGA  >  NC_002947/2729502‑2729791                                                                                                                                                     |                                                                                                                                               gcaccagggtcagcgtgttggagttcgacaaggccgtcagcccgttgaacagcacgaagccgatgatcgccagcaacagcgcccggcgccgataccaGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCt                                                                                                                                                >  4:318732‑M1/98‑149 (MQ=255)   aTGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTg                                                                                                                                               <  4:204966/148‑1 (MQ=255)               aTGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCCCGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCAGGTATCGGCGCCgg                                                                                                                                  >  7:109333/1‑149 (MQ=255)                tGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGTCGTATGCCTTGGGCTCGTTACTGACCTCCATCCCGTTGGTGACGTTCACCCAAGTCTGGTATCGGCGCCggg                                                                                                                                 >  8:298283/1‑149 (MQ=255)                       gcggGTATGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGtt                                                                                                                          <  7:298283/149‑1 (MQ=255)                        cggGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTg                                                                                                                         <  7:95927/149‑1 (MQ=255)                        cggGTCTGCTCGACAAGATCGCCGATGGCATGCACTTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGCCCCAAGGCTGGTATCGGCGCCGGGCGCTGTTg                                                                                                                         <  5:365417/149‑1 (MQ=255)                         gggTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGc                                                                                                                        >  1:153634/1‑149 (MQ=255)                         gggTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGc                                                                                                                        >  8:49248/1‑149 (MQ=255)                              tGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGc                                                                                                                    >  7:29879/1‑148 (MQ=255)                               gCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGa                                                                                                                  >  4:153268/1‑149 (MQ=255)                                cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGc                                                                                                                    <  3:162445/146‑1 (MQ=255)                                cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGat                                                                                                                 >  8:239563/1‑149 (MQ=255)                                cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGat                                                                                                                 >  3:157234/1‑149 (MQ=255)                                cTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGa                                                                                                                  >  6:252846/1‑148 (MQ=255)                                    aCCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGatca‑tc                                                                                                            <  5:220258/149‑1 (MQ=255)                                        gATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCCTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCCATCA‑TCGGCt                                                                                                        >  8:64622/1‑149 (MQ=255)                                             ccGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTg                                                                                                   <  6:42687/149‑1 (MQ=255)                                                   gCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGtt                                                                                              <  2:153634/148‑1 (MQ=255)                                                   gCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTc                                                                                             <  7:239563/149‑1 (MQ=255)                                                      tGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAAc                                                                                          <  8:244132/149‑1 (MQ=255)                                                        cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCTCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACg                                                                                         <  5:363155/148‑1 (MQ=255)                                                        cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACgg                                                                                        <  3:153268/149‑1 (MQ=255)                                                        cacaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACg                                                                                         <  7:49248/148‑1 (MQ=255)                                                         acaTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACggg                                                                                       <  5:286205/149‑1 (MQ=255)                                                           cccAGCCATGGCCTGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                                                                                     >  1:134617/3‑149 (MQ=255)                                                           aTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                                                                                     >  8:35820/1‑149 (MQ=255)                                                           aTCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                                                                                     >  2:1505/1‑149 (MQ=255)                                                            tCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCt                                                                                     >  4:96751/1‑148 (MQ=255)                                                                 cAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGc                                                                               <  8:262627/149‑1 (MQ=255)                                                                  aGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGTGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGcc                                                                              <  8:109333/149‑1 (MQ=255)                                                                              ggCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  <  3:265961/149‑1 (MQ=255)                                                                              ggCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTc                                                                   >  1:25004/1‑148 (MQ=255)                                                                               gCAATTGGGCACGGCGTTATCCTTGGGCGCGTTACTGACCGCCATCCCGTTGGTGACGTTTCCCCAAGGCTGGTATCGGCGCCGGGGGCTGGTGGTGGGGATCATTCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  <  1:72099/149‑1 (MQ=255)                                                                                 aaTGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAac                                                               <  3:96751/149‑1 (MQ=255)                                                                                     ggTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGc                                                           <  2:134617/149‑1 (MQ=255)                                                                                                 agccttgggtcaacgtcaccaacgggatggcggtcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGtgc                                               >  4:318732‑M2/53‑149 (MQ=255)                                                                                                  gccttgggtcaacgtcaccaacgggatggcggtcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTAGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  <  6:359329‑M2/78‑1 (MQ=255)                                                                                                  gccttgggtcaacgtcaccaacgggatggcggtcagtaacgagcccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTAGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  >  5:359329‑M2/52‑129 (MQ=255)                                                                                                   CCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCTACGGGCTGACGGCCTTGTCGaa                                                                      >  4:64734‑M1/1‑124 (MQ=255)                                                                                                   CCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCTACGGGCTGACGGCCTTGTCGaa                                                                      <  3:64734‑M1/124‑1 (MQ=255)                                                                                                      TGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGCCCCTGGTGCTgcgc                                          <  6:72204‑M1/149‑1 (MQ=255)                                                                                                         GCTCGTTACTGACCGCCATCGCGTTGGTGACGTTGACCGAAGGGTGGTATCGGCGCCGGGCGCTGTTGCTGGCGAGCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCttt                                       >  7:64622‑M1/1‑149 (MQ=255)                                                                                                         GCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  >  2:226783‑M1/1‑122 (MQ=255)                                                                                                         GCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTcc                                                                  <  1:226783‑M1/122‑1 (MQ=255)                                                                                                             gTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCttttt                                     <  5:72204/147‑1 (MQ=255)                                                                                                                  tGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACgggg                              >  1:47927/1‑149 (MQ=255)                                                                                                                    aCCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGc                            >  2:238916/1‑149 (MQ=255)                                                                                                                      cGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTgg                                                                                                                     >  7:124506/1‑59 (MQ=255)                                                                                                                      cGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTgg                                                                                                                     <  8:124506/59‑1 (MQ=255)                                                                                                                         cATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGtgct                                              >  1:280285/1‑126 (MQ=255)                                                                                                                         cATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGtgct                                              <  2:280285/126‑1 (MQ=255)                                                                                                                             ccGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGcggccg                    <  4:157234/148‑1 (MQ=255)                                                                                                                                   gTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGc             <  7:35820/149‑1 (MQ=255)                                                                                                                                              ccaaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCTGa  >  3:32818‑M2/8‑149 (MQ=255)                                                                                                                                                aaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGcggccg                    >  2:177071‑M2/6‑129 (MQ=255)                                                                                                                                                aaggcTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGcggccg                    <  1:177071‑M2/124‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TAATGCAGGCAGGTATGCGCCGGCGGGTCTGCTCGACCAGATCGCCGATGGCATGCACATCAGCCAGGCCATGGCTGGGCAATGGGTCACGGCGTATGCCTTGGGCTCGTTACTGACCGCCATCCCGTTGGTGACGTTGACCCAAGGCTGGTATCGGCGCCGGGCGCTGTTGCTGGCGATCA‑TCGGCTTCGTGCTGTTCAACGGGCTGACGGCCTTGTCGAACTCCAACACGCTGACCCTGGTGCTGCGCTTTTTCACGGGGGCTGCGGCCGGCCTGGCATGGGGCCTGA  >  NC_002947/2729502‑2729791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.