New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2928415 =	34 (0.560)	4 (0.070)	4/252	NT	11.9%	coding (1682/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	2928448 =	27 (0.470)					coding (1715/2472 nt)	PP_2565	UvrD/REP family helicase

CGCCCTGTTTGGCGAGAACAACCCAGAAAACCTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGC  >  NC_002947/2928269‑2928562                                                                                                                                                   |                                                                                                                                                      gtagttgtcgaccagcatcacccgcgtgttggccggcgacgggaacgccttggtgaactccatgaaatacttgggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGgc                                                                                                                                                     >  1:149336‑M1/147‑149 (MQ=255)            gCGAGAACAACCCAGAAAACCTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGcggcccg                                                                                                                                          <  5:293635/149‑1 (MQ=255)                                cTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCa                                                                                                                     >  8:324446/1‑149 (MQ=255)                                cTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCa                                                                                                                     >  8:133201/1‑149 (MQ=255)                                cTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCa                                                                                                                     >  4:192085/1‑149 (MQ=255)                                 ccggcgacgggaacgccttggtgaactccatgaaatacttgggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCAt                                                                                                                    >  7:234455‑M1/115‑149 (MQ=255)                                  gCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATg                                                                                                                   >  8:27681/1‑149 (MQ=255)                                   ggcgacgggaacgccttggtgaactccatgaaatacttgggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGc                                                                                                                  >  8:248105‑M1/113‑149 (MQ=255)                                   cACTTACTGCCCGATCGGTTGCTGCGGCCGCTGGCTCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑ccgtat                                                                                                                  <  6:127012/149‑5 (MQ=255)                                    aCTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGcc                                                                                                                 >  6:14929/1‑149 (MQ=255)                                    aCTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGcc                                                                                                                 >  3:217943/1‑149 (MQ=255)                                        aCTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCa                                                                                                               <  2:203107/147‑1 (MQ=255)                                            cccGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCAtt                                                                                                          <  5:14929/148‑1 (MQ=255)                                            cccGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATtc                                                                                                         <  7:278163/149‑1 (MQ=255)                                                aTCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATtcgtcg                                                                                                     <  1:210016/149‑1 (MQ=255)                                                          gcGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCg                                                                                          >  8:252749/1‑149 (MQ=255)                                                                gCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGt                                                                                     >  2:93541/1‑148 (MQ=255)                                                                        aCCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTgg                                                                            <  4:294677/149‑1 (MQ=255)                                                                         gggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATg                                                                                                                   <  2:86083‑M1/36‑1 (MQ=255)                                                                         gggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATg                                                                                                                   >  1:86083‑M1/75‑110 (MQ=255)                                                                            gatgatCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCCCACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCGAt                                                                        >  4:280903/1‑149 (MQ=255)                                                                             atgatCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAAt                                                                        <  7:252749/148‑1 (MQ=255)                                                                                atCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGa                                                                     >  7:242941/1‑148 (MQ=255)                                                                                            cAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGCATGGCAATCGATCTACGGCTGGCg                                                        >  3:205742/1‑149 (MQ=255)                                                                                               gACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTgg                                                     <  7:27681/149‑1 (MQ=255)                                                                                                    gtCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGtt                                                >  8:135392/1‑149 (MQ=255)                                                                                                          gcAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTGATGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGccc                                           <  1:93541/149‑1 (MQ=255)                                                                                                           cAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCaa                                         <  8:242941/149‑1 (MQ=255)                                                                                                                    aGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATCCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCAt                                >  1:284493/1‑149 (MQ=255)                                                                                                                         gTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGa                             <  7:133201/147‑1 (MQ=255)                                                                                                                         gTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGa                             <  4:217943/147‑1 (MQ=255)                                                                                                                         gTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAg                            <  3:192085/148‑1 (MQ=255)                                                                                                                              gTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCAcc                      <  2:284493/149‑1 (MQ=255)                                                                                                                                  ctgcctCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAgg                  <  8:228904/149‑1 (MQ=255)                                                                                                                                      ctCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGtt              >  5:11464/1‑149 (MQ=255)                                                                                                                                       tCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTAGTTCATGGAGTTCCCCAAGGCGtgc             >  4:74332/1‑147 (MQ=255)                                                                                                                                        cGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTcc            >  5:42969/1‑149 (MQ=255)                                                                                                                                        cGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTAGTTGCTG‑TGCGTGGGTGAAGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTcc            >  5:263333/1‑149 (MQ=255)                                                                                                                                         gCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTccc           >  5:152446/1‑149 (MQ=255)                                                                                                                                                   GGCGCCGCGGCCCGGCCATGCACACCGGGCGGCCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGc  <  1:39799‑M1/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CGCCCTGTTTGGCGAGAACAACCCAGAAAACCTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGC  >  NC_002947/2928269‑2928562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.