New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2928415 =	34 (0.560)	4 (0.070)	4/252	NT	11.9%	coding (1682/2472 nt)	PP_2565	UvrD/REP family helicase
	?	NC_002947	2928448 =	27 (0.470)					coding (1715/2472 nt)	PP_2565	UvrD/REP family helicase

CTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGCCAACACGCGGGTGATGCTGGTCGACAACTAC  >  NC_002947/2928300‑2928593                                                                                                                                                      |                                                                                                                                                   cTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCa                                                                                                                                                    >  8:324446/1‑149 (MQ=255) cTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCa                                                                                                                                                    >  8:133201/1‑149 (MQ=255) cTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCa                                                                                                                                                    >  4:192085/1‑149 (MQ=255)  ccggcgacgggaacgccttggtgaactccatgaaatacttgggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCAt                                                                                                                                                   >  7:234455‑M1/115‑149 (MQ=255)   gCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATg                                                                                                                                                  >  8:27681/1‑149 (MQ=255)    ggcgacgggaacgccttggtgaactccatgaaatacttgggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGc                                                                                                                                                 >  8:248105‑M1/113‑149 (MQ=255)     aCTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGcc                                                                                                                                                >  6:14929/1‑149 (MQ=255)     aCTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGcc                                                                                                                                                >  3:217943/1‑149 (MQ=255)         aCTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCa                                                                                                                                              <  2:203107/147‑1 (MQ=255)             cccGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCAtt                                                                                                                                         <  5:14929/148‑1 (MQ=255)             cccGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATtc                                                                                                                                        <  7:278163/149‑1 (MQ=255)                 aTCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATtcgtcg                                                                                                                                    <  1:210016/149‑1 (MQ=255)                           gcGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCg                                                                                                                         >  8:252749/1‑149 (MQ=255)                                 gCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGt                                                                                                                    >  2:93541/1‑148 (MQ=255)                                         aCCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTgg                                                                                                           <  4:294677/149‑1 (MQ=255)                                          gggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATg                                                                                                                                                  >  1:86083‑M1/75‑110 (MQ=255)                                          gggcgaactgccacgccagccgtagatcgattgccagtcgtcacccacgcacagcaacgacgaatgctgggcatGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATg                                                                                                                                                  <  2:86083‑M1/36‑1 (MQ=255)                                             gatgatCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCCCACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCGAt                                                                                                       >  4:280903/1‑149 (MQ=255)                                              atgatCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAAt                                                                                                       <  7:252749/148‑1 (MQ=255)                                                 atCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGa                                                                                                    >  7:242941/1‑148 (MQ=255)                                                             cAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGCATGGCAATCGATCTACGGCTGGCg                                                                                       >  3:205742/1‑149 (MQ=255)                                                                gACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTgg                                                                                    <  7:27681/149‑1 (MQ=255)                                                                     gtCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGtt                                                                               >  8:135392/1‑149 (MQ=255)                                                                           gcAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTGATGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGccc                                                                          <  1:93541/149‑1 (MQ=255)                                                                            cAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCaa                                                                        <  8:242941/149‑1 (MQ=255)                                                                                     aGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATCCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCAt                                                               >  1:284493/1‑149 (MQ=255)                                                                                          gTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGa                                                            <  7:133201/147‑1 (MQ=255)                                                                                          gTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGa                                                            <  4:217943/147‑1 (MQ=255)                                                                                          gTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAg                                                           <  3:192085/148‑1 (MQ=255)                                                                                               gTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCAcc                                                     <  2:284493/149‑1 (MQ=255)                                                                                                   ctgcctCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAgg                                                 <  8:228904/149‑1 (MQ=255)                                                                                                       ctCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGtt                                             >  5:11464/1‑149 (MQ=255)                                                                                                        tCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTAGTTCATGGAGTTCCCCAAGGCGtgc                                            >  4:74332/1‑147 (MQ=255)                                                                                                         cGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTcc                                           >  5:42969/1‑149 (MQ=255)                                                                                                         cGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTAGTTGCTG‑TGCGTGGGTGAAGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTcc                                           >  5:263333/1‑149 (MQ=255)                                                                                                          gCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTccc                                          >  5:152446/1‑149 (MQ=255)                                                                                                                 gcatggcgcccggtgtgcatggccgggccgcggcgccATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGcc                                    >  8:248105‑M2/38‑149 (MQ=255)                                                                                                                  catggcgcccggtgtgcatggccgggccgcggcgccATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGccc                                                                          <  2:86083‑M2/74‑1 (MQ=255)                                                                                                                  catggcgcccggtgtgcatggccgggccgcggcgccATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGccc                                                                          >  1:86083‑M2/37‑110 (MQ=255)                                                                                                                   atggcgcccggtgtgcatggccgggccgcggcgccATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCgg                                  >  7:234455‑M2/36‑149 (MQ=255)                                                                                                                    GGCGCCGCGGCCCGGCCATGCACACCGGGCGGCCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGc                                 <  1:39799‑M1/149‑1 (MQ=255)                                                                                                                                      tGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGCCAACACGCGGGTGATGCTg              <  7:324446/149‑1 (MQ=255)                                                                                                                                              gggCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGCCAACACGCGGGTGATGCTGGTCGACaa      <  7:135392/149‑1 (MQ=255)                                                                                                                                                   gccATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGCCAACACGCGGGTGATGCTGGTCGACAACTAc  >  1:149336‑M2/4‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CTGCACTTACTGCCCGATCCGTTGCTGCGGCCGCTGGCGCACCTGATGATCGACGAGTTCCAGGACGTGTCGCCGCAGATCGTCAGCTGGTTGCGTGCCTGCCTCGCTGAAATACGGCGCCGCGGCCCGGCCATGCACACCGGGCG‑CCATGCCCAGCATTCGTCGTTGCTG‑TGCGTGGGTGACGACTGGCAATCGATCTACGGCTGGCGTGGCAGTTCGCCCAAGTATTTCATGGAGTTCACCAAGGCGTTCCCGTCGCCGGCCAACACGCGGGTGATGCTGGTCGACAACTAC  >  NC_002947/2928300‑2928593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.