New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3063923	43 (0.710)	4 (0.070)	4/252	NT	9.2%	coding (208/462 nt)	PP_2675	cytochrome c‑type protein
	?	NC_002947	= 3063938	38 (0.660)					coding (223/462 nt)	PP_2675	cytochrome c‑type protein

CGGTACAGCCTGGGCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCG  >  NC_002947/3063775‑3064070                                                                                                                                                      |                                                                                                                                                    cGGTACAGCCTGGGCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCG                                                                                                                                                     >  8:253028‑M1/1‑149 (MQ=255)  ggTACAGCCTGGGCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGt                                                                                                                                                    <  2:339390/149‑1 (MQ=255)       aGCCTGGGCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGaaa                                                                                                                                               >  1:251740/1‑149 (MQ=255)         ccTGGGCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATc                                                                                                                                             >  4:15839/1‑149 (MQ=255)            gggCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATc                                                                                                                                             <  1:100468/146‑1 (MQ=255)            gggCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATc                                                                                                                                             >  2:100468/1‑146 (MQ=255)            gggCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGgc                                                                                                                                          <  3:36549/149‑1 (MQ=255)             ggCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGgc                                                                                                                                          <  8:29435/148‑1 (MQ=255)                  aTGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTcg                                                                                                                                    >  2:254251‑M2/1‑147 (MQ=255)                   tGGCAACGTGGTGCCCCAGGCAGTGGAGACCATAGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTcg                                                                                                                                    <  1:40615‑M2/149‑3 (MQ=255)                     gCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTcggcc                                                                                                                                 >  2:337425‑M2/1‑144 (MQ=255)                         cGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTAc                                                                                                                              >  4:242675/1‑148 (MQ=255)                             gtgCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCa                                                                                                                         <  2:269739/149‑1 (MQ=255)                              tgCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGaggcgccgatttccacggccttgtcgtgc                                                                                                                        <  5:114118‑M1/149‑30 (MQ=255)                              tgCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAAc                                                                                                                           >  1:203286/1‑146 (MQ=255)                                  ccAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGaggcgccgatttccacggccttgtcgtgctcgg                                                                                                                    <  2:145105‑M1/149‑34 (MQ=255)                                  ccAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACt                                                                                                                    >  6:304248/1‑149 (MQ=255)                                     ggCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTTGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTgcg                                                                                                                 <  5:304248/149‑1 (MQ=255)                                       cAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCt                                                                                                               <  2:251740/149‑1 (MQ=255)                                         gTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGc                                                                                                             <  7:220752/149‑1 (MQ=255)                                         gTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGc                                                                                                             <  2:40615/149‑1 (MQ=255)                                            gagaCCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCt                                                                                                           <  7:31712/148‑1 (MQ=255)                                                ccA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCAt                                                                                                      >  4:185257/1‑149 (MQ=255)                                                    aGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGc                                                                                                   <  7:253028/149‑1 (MQ=255)                                                             ccccGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGcc                                                                                          <  3:242675/149‑1 (MQ=255)                                                              cccGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGcc                                                                                          >  5:194956/1‑148 (MQ=255)                                                               ccGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCaa                                                                                        <  6:174225/149‑1 (MQ=255)                                                                     aaGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCgg                                                                                  >  8:174441/1‑149 (MQ=255)                                                                      aGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCggt                                                                                 <  7:132415/149‑1 (MQ=255)                                                                       ggACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCggtg                                                                                <  2:178381/149‑1 (MQ=255)                                                                          cacTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTa                                                                             <  7:174441/149‑1 (MQ=255)                                                                            cTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATc                                                                           >  1:37636/1‑149 (MQ=255)                                                                                 gTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGcc                                                                      <  2:73030/149‑1 (MQ=255)                                                                                              gcgacggcTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGaggcgccgatttccacggccttgtcgt                                                                                                                          <  1:144775‑M1/84‑28 (MQ=255)                                                                                              gcgacggcTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGaggcgccgatttccacggccttgtcgt                                                                                                                          >  2:144775‑M1/1‑57 (MQ=255)                                                                                                 acggcTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTc                                                      <  2:203286/149‑1 (MQ=255)                                                                                                    gcTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGAt                                                   <  7:23621/149‑1 (MQ=255)                                                                                                          ccGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGt                                             <  8:247252/149‑1 (MQ=255)                                                                                                                   aCCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGc                                    <  3:15839/149‑1 (MQ=255)                                                                                                                    cccGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGTCTTGCGCATGCTCGATGCGGGTGATGCCGGc                                    >  6:60519/1‑148 (MQ=255)                                                                                                                     ccGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGAAGCCGGCGa                                  >  8:129071/1‑149 (MQ=255)                                                                                                                     ccGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCCCATGCTCGATGCGGGTGATGCCGGCGa                                  <  5:63644/149‑1 (MQ=255)                                                                                                                         aCCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGaa                              >  5:138110/1‑149 (MQ=255)                                                                                                                          ccGCAGCTCGCCCAAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAAt                             >  2:271299/1‑149 (MQ=255)                                                                                                                                 tCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTtcgt                      >  3:142661/1‑149 (MQ=255)                                                                                                                                  cGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTtcgtc                     <  6:194956/149‑1 (MQ=255)                                                                                                                                     ccGAGCACGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggcccttggtctccactgcctgg                  <  2:145105‑M2/149‑117 (MQ=255)                                                                                                                                      cGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGTCGATGAATGGTTCGTCGAGc                 >  5:262491/1‑149 (MQ=255)                                                                                                                                      cGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGc                 <  6:6546/149‑1 (MQ=255)                                                                                                                                       gAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCg                >  8:53994/1‑149 (MQ=255)                                                                                                                                        aGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCGGCCTGTCAAGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGCCGTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTACGTCGAGCgg               >  7:171077/1‑149 (MQ=255)                                                                                                                                         gCACGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggcccttggtctccactgcctggggca              <  5:114118‑M2/149‑121 (MQ=255)                                                                                                                                           aCGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgc                                                                             >  2:144775‑M2/1‑27 (MQ=255)                                                                                                                                           aCGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgc                                                                             <  1:144775‑M2/84‑58 (MQ=255)                                                                                                                                           aCGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGAt                                 <  7:233216/128‑1 (MQ=255)                                                                                                                                           aCGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGAt                                 >  8:233216/1‑128 (MQ=255)                                                                                                                                                  ggCCGaggcgccgatttccacggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggcccttggtctccactgcctggggcaccacgttgc     >  2:337425‑M1/1‑5 (MQ=255)                                                                                                                                                     cGaggcgccgatttccacggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggcccttggtctccactgcctggggcaccacgttgccat  >  2:254251‑M1/1‑2 (MQ=255)                                                                                                                                                     cGaggcgccgatttccacggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggccctatggtctccactgcctggggcaccacgttgcca  <  1:40615‑M1/149‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CGGTACAGCCTGGGCCCATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCG  >  NC_002947/3063775‑3064070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.