New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3063923	43 (0.710)	4 (0.070)	4/252	NT	9.2%	coding (208/462 nt)	PP_2675	cytochrome c‑type protein
	?	NC_002947	= 3063938	38 (0.660)					coding (223/462 nt)	PP_2675	cytochrome c‑type protein

ATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCGCGGTTCGCGACGGC  >  NC_002947/3063792‑3064084                                                                                                                                                    |                                                                                                                                                   aTGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTcg                                                                                                                                                  >  2:254251‑M2/1‑147 (MQ=255)  tGGCAACGTGGTGCCCCAGGCAGTGGAGACCATAGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTcg                                                                                                                                                  <  1:40615‑M2/149‑3 (MQ=255)    gCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTcggcc                                                                                                                                               >  2:337425‑M2/1‑144 (MQ=255)        cGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTAc                                                                                                                                            >  4:242675/1‑148 (MQ=255)            gtgCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCa                                                                                                                                       <  2:269739/149‑1 (MQ=255)             tgCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAAc                                                                                                                                         >  1:203286/1‑146 (MQ=255)                 ccAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACt                                                                                                                                  >  6:304248/1‑149 (MQ=255)                    ggCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTTGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTgcg                                                                                                                               <  5:304248/149‑1 (MQ=255)                      cAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCt                                                                                                                             <  2:251740/149‑1 (MQ=255)                        gTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGc                                                                                                                           <  7:220752/149‑1 (MQ=255)                        gTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGc                                                                                                                           <  2:40615/149‑1 (MQ=255)                           gagaCCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCt                                                                                                                         <  7:31712/148‑1 (MQ=255)                               ccA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCAt                                                                                                                    >  4:185257/1‑149 (MQ=255)                                   aGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGc                                                                                                                 <  7:253028/149‑1 (MQ=255)                                            ccccGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGcc                                                                                                        <  3:242675/149‑1 (MQ=255)                                             cccGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGcc                                                                                                        >  5:194956/1‑148 (MQ=255)                                              ccGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCaa                                                                                                      <  6:174225/149‑1 (MQ=255)                                                    aaGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCgg                                                                                                >  8:174441/1‑149 (MQ=255)                                                     aGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCggt                                                                                               <  7:132415/149‑1 (MQ=255)                                                      ggACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCggtg                                                                                              <  2:178381/149‑1 (MQ=255)                                                         cacTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTa                                                                                           <  7:174441/149‑1 (MQ=255)                                                           cTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATc                                                                                         >  1:37636/1‑149 (MQ=255)                                                                gTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGcc                                                                                    <  2:73030/149‑1 (MQ=255)                                                                                acggcTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTc                                                                    <  2:203286/149‑1 (MQ=255)                                                                                   gcTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGAt                                                                 <  7:23621/149‑1 (MQ=255)                                                                                         ccGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGt                                                           <  8:247252/149‑1 (MQ=255)                                                                                                  aCCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGc                                                  <  3:15839/149‑1 (MQ=255)                                                                                                   cccGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGTCTTGCGCATGCTCGATGCGGGTGATGCCGGc                                                  >  6:60519/1‑148 (MQ=255)                                                                                                    ccGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGAAGCCGGCGa                                                >  8:129071/1‑149 (MQ=255)                                                                                                    ccGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCCCATGCTCGATGCGGGTGATGCCGGCGa                                                <  5:63644/149‑1 (MQ=255)                                                                                                        aCCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGaa                                            >  5:138110/1‑149 (MQ=255)                                                                                                         ccGCAGCTCGCCCAAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAAt                                           >  2:271299/1‑149 (MQ=255)                                                                                                                tCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTtcgt                                    >  3:142661/1‑149 (MQ=255)                                                                                                                 cGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTtcgtc                                   <  6:194956/149‑1 (MQ=255)                                                                                                                    ccGAGCACGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggcccttggtctccactgcctgg                                <  2:145105‑M2/149‑117 (MQ=255)                                                                                                                     cGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGTCGATGAATGGTTCGTCGAGc                               >  5:262491/1‑149 (MQ=255)                                                                                                                     cGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGc                               <  6:6546/149‑1 (MQ=255)                                                                                                                      gAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCg                              >  8:53994/1‑149 (MQ=255)                                                                                                                       aGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCGGCCTGTCAAGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGCCGTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTACGTCGAGCgg                             >  7:171077/1‑149 (MQ=255)                                                                                                                        gCACGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgccgtccaggctcacgccagtgtccttgatcggggtcaggcccttggtctccactgcctggggca                            <  5:114118‑M2/149‑121 (MQ=255)                                                                                                                          aCGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgc                                                                                           <  1:144775‑M2/84‑58 (MQ=255)                                                                                                                          aCGACAAGGCCGTGGAAATCGGCGCCTcggccttgtcgtgctcgggcgagctgcggtacgggttgaccgcggcccagccgtcgc                                                                                           >  2:144775‑M2/1‑27 (MQ=255)                                                                                                                          aCGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGAt                                               <  7:233216/128‑1 (MQ=255)                                                                                                                          aCGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGAt                                               >  8:233216/1‑128 (MQ=255)                                                                                                                                      gcgAACTCGTCGCCGCTGCCTACAACCCGAACAGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTTACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATTGTTCGTCGAGCGGGTACGCCACGGcgcg              <  6:262491/147‑1 (MQ=255)                                                                                                                                           aTCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCGCGGTTcg         >  7:86009/1‑149 (MQ=255)                                                                                                                                            tCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCGCGGTTcgc        >  8:38830/1‑149 (MQ=255)                                                                                                                                                  ccTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCGCGGTTCGCGACGGc  <  2:37636/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ATGGCAACGTGGTGCCCCAGGCAGTGGAGACCA‑AGGGCCTGACCCCGATCAAGGACACTGGCGTGAGCCTGGACGGCGACGGCTGGGCCGCGGTCAACCCGTACCGCAGCTCGCCCGAGCACGACAAGGCCGTGGAAATCGGCGCCTCGGCCTACAACCAGAACTGCGCTGCCTGTCATGGCCTGGAGGCCAAGTCCGGTGGTATCGCGCCTGACTTGCGCATGCTCGATGCGGGTGATGCCGGCGATGAATGGTTCGTCGAGCGGGTACGCCACGGCGCGGTTCGCGACGGC  >  NC_002947/3063792‑3064084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.