New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4308293 =	36 (0.600)	3 (0.050)	3/256	NT	7.1%	intergenic (‑46/‑302)	PP_3780/PP_3781	hypothetical protein/oxygen‑independent coproporphyrinogen III oxidase family protein
	?	NC_002947	4308337 =	44 (0.750)					intergenic (‑90/‑258)	PP_3780/PP_3781	hypothetical protein/oxygen‑independent coproporphyrinogen III oxidase family protein

GTGGTGAAGCAGCGGCCCACCCAGATGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACT  >  NC_002947/4308146‑4308439                                                                                                                                                    |                                                                                                                                                    tctatatcaaaaatgtattgcctgtgaaaaagttgatattaataagtggtgcgcggtaatggttttacgtatttttaaaaggttgattggttcggttttatatgcggcgtggttgattttccttgaagtatgtgatttgaagggcataa                                                                                                                                                    <  7:296777‑M1/2‑1 (MQ=255)   ggtgAAGCAGCGGCCCACCCAGATGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑g                                                                                                                                                  >  8:298278/1‑148 (MQ=255)    gtgAAGCAGCGGCCCACCCAGATGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCCTTCTATTGAGGTTTTCTTGCAA‑GTa                                                                                                                                                >  2:192938/1‑149 (MQ=255)           agcGGCCCACCCAGATGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCt                                                                                                                                         <  3:372124/149‑1 (MQ=255)                        gATGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCtt                                                                                                                             >  3:122401/1‑148 (MQ=255)                         aTGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCa                                                                                                                           <  8:241701/149‑1 (MQ=255)                              aCCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTa                                                                                                                      <  5:237637/149‑1 (MQ=255)                                      cTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGa                                                                                                              <  4:350357/149‑1 (MQ=255)                                         aataagtggtgcgcggtaatggttttacgtatttttaaaaggtggattggttcggttttatatgcggcgtggttgatgttccttgcagtaagtgatttgaagggcatAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGacac                                                                                                           <  6:11537‑M1/42‑1 (MQ=255)                                             agtggtgcgcggtaatggttttacgtatttttaaaaggtggattggttcggttttatatgcggcgtggttgatgttccttgcagtaagtgatttgaagggcatAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTAt                                                                                                       >  5:11537‑M1/104‑149 (MQ=255)                                              gtggtgcgaggtaatggtgttacgtatttttaacaggtggattggttcggttttatatgcggcgtggttgatgttcatttcagtaagtgatttgaaggtcatAA‑GTATCTCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATg                                                                                                      >  8:81902‑M1/103‑149 (MQ=255)                                              aaTCCTGGCCCACGCCACGAACAACATGCCGACGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATg                                                                                                      <  2:127942/149‑1 (MQ=255)                                              aaTCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATg                                                                                                      <  7:298278/149‑1 (MQ=255)                                                        cacgccacgAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAAt                                                                                            <  5:63179/149‑1 (MQ=255)                                                            ccacgAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCCTTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACt                                                                                        <  1:192938/149‑1 (MQ=255)                                                              acgAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTa                                                                                      <  5:247653/149‑1 (MQ=255)                                                                  acaacaGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGc                                                                                  <  1:38081/149‑1 (MQ=255)                                                                     acaGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAg                                                                               <  3:286347/149‑1 (MQ=255)                                                                     acaGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAg                                                                               <  1:170117/149‑1 (MQ=255)                                                                        ggCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGaa                                                                            <  6:219744/149‑1 (MQ=255)                                                                               gAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAAc                                                                     >  1:291577/1‑149 (MQ=255)                                                                                aaCACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCTTTCAAATCACTTACTGCAAGGAACATCAAcc                                                                    <  7:38863/149‑1 (MQ=255)                                                                                   acCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCACCCAcg                                                                 >  5:12513/1‑149 (MQ=255)                                                                                     cTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGGCCTTCAAATCACTTACGGCAAGGAACATCAACCAcgcc                                                               >  1:173008/1‑149 (MQ=255)                                                                                               atCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAAGGAATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATaa                                                       >  1:293239/1‑148 (MQ=255)                                                                                                  aGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAAcc                                                   >  2:98023/1‑148 (MQ=255)                                                                                                    cACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGaa                                                <  4:177668/149‑1 (MQ=255)                                                                                                       tGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAAcc                                              >  7:267544/1‑148 (MQ=255)                                                                                                       tGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAAcc                                              >  3:363905/1‑148 (MQ=255)                                                                                                           cgacAGGCTGCACGATAATCAAACTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGCCTCGCACCTTCAGCGTAGCCCGCGACACTAATCCACTTCAAAACACAAACGGCAAGGAACATCAACCACCCCGAAATTAAAACCGCACCAATc                                          >  4:74467/4‑148 (MQ=255)                                                                                                                 gCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCttt                                   >  8:32857/1‑149 (MQ=255)                                                                                                                 gCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCttt                                   <  8:267544/149‑1 (MQ=255)                                                                                                                  cTGCATGATTATCATTCTATTGAGGTTTTCTTGCTA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCAGTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCtttt                                  <  2:231295/149‑1 (MQ=255)                                                                                                                   tGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGGCACTTATGCCCTTCAAATCAGTTACTGCAAGGAACATCAACAACGACGCATATAAAACAGAACAAATCGACCtttt                                  >  8:296777/1‑148 (MQ=255)                                                                                                                    gCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTa                                 >  2:21554/1‑148 (MQ=255)                                                                                                                            aTCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACg                         >  2:318631/1‑148 (MQ=255)                                                                                                                               aTTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTaaa                     <  8:159287/149‑1 (MQ=255)                                                                                                                               aTTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTaa                      >  7:159287/1‑148 (MQ=255)                                                                                                                                ttCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTaaaa                    <  4:122401/149‑1 (MQ=255)                                                                                                                                   tATTGAGCTTTTCTTGCAA‑GTATCGCCCAGCCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACCCCGCATATAAAACCGAACCAAACCACCATTTAAAAATACGTAAAACCa                 >  6:378864/1‑149 (MQ=255)                                                                                                                                     tttaGGTTTTCTTGCAA‑GTATCGCCCTGGCTCTCAGCTTCATCGTATCCACCGTCACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAAAAACGCCGCATATAAAACCGAACCTATCCACCTTTTAAAAATACGTAATACCAt                <  3:74467/145‑1 (MQ=255)                                                                                                                                     ttGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCAt                >  6:227283/1‑148 (MQ=255)                                                                                                                                                ttGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGcacca    >  7:306843/1‑149 (MQ=255)                                                                                                                                                ttGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTGTTAAAAATACGTAAAACCATTACCgcgccc      >  7:60877/1‑145 (MQ=255)                                                                                                                                                ttGCAA‑GTATAGCCCTGGCACGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGATCATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACGGCGcacca    >  7:160501/1‑149 (MQ=255)                                                                                                                                                 tGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTaaaa                              >  4:189960/1‑122 (MQ=255)                                                                                                                                                 tGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTaaaa                              <  3:189960/122‑1 (MQ=255)                                                                                                                                                  gCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACt  >  5:68505/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTGGTGAAGCAGCGGCCCACCCAGATGGGACCCTACGCTGCCAGCAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACT  >  NC_002947/4308146‑4308439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.