New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4308293 =	36 (0.600)	3 (0.050)	3/256	NT	7.1%	intergenic (‑46/‑302)	PP_3780/PP_3781	hypothetical protein/oxygen‑independent coproporphyrinogen III oxidase family protein
	?	NC_002947	4308337 =	44 (0.750)					intergenic (‑90/‑258)	PP_3780/PP_3781	hypothetical protein/oxygen‑independent coproporphyrinogen III oxidase family protein

CAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTCACAGGCAATACATTTTTGATATAGA  >  NC_002947/4308190‑4308483                                                                                                                                                     |                                                                                                                                                   agtggtgcgcggtaatggttttacgtatttttaaaaggtggattggttcggttttatatgcggcgtggttgatgttccttgcagtaagtgatttgaagggcatAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTAt                                                                                                                                                   >  5:11537‑M1/104‑149 (MQ=255)  gtggtgcgaggtaatggtgttacgtatttttaacaggtggattggttcggttttatatgcggcgtggttgatgttcatttcagtaagtgatttgaaggtcatAA‑GTATCTCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATg                                                                                                                                                  >  8:81902‑M1/103‑149 (MQ=255)  aaTCCTGGCCCACGCCACGAACAACATGCCGACGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATg                                                                                                                                                  <  2:127942/149‑1 (MQ=255)  aaTCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATg                                                                                                                                                  <  7:298278/149‑1 (MQ=255)            cacgccacgAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAAt                                                                                                                                        <  5:63179/149‑1 (MQ=255)                ccacgAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCCTTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACt                                                                                                                                    <  1:192938/149‑1 (MQ=255)                  acgAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTa                                                                                                                                  <  5:247653/149‑1 (MQ=255)                      acaacaGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGc                                                                                                                              <  1:38081/149‑1 (MQ=255)                         acaGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAg                                                                                                                           <  1:170117/149‑1 (MQ=255)                         acaGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAg                                                                                                                           <  3:286347/149‑1 (MQ=255)                            ggCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGaa                                                                                                                        <  6:219744/149‑1 (MQ=255)                                   gAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAAc                                                                                                                 >  1:291577/1‑149 (MQ=255)                                    aaCACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCTTTCAAATCACTTACTGCAAGGAACATCAAcc                                                                                                                <  7:38863/149‑1 (MQ=255)                                       acCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCACCCAcg                                                                                                             >  5:12513/1‑149 (MQ=255)                                         cTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGGCCTTCAAATCACTTACGGCAAGGAACATCAACCAcgcc                                                                                                           >  1:173008/1‑149 (MQ=255)                                                   atCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAAGGAATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATaa                                                                                                   >  1:293239/1‑148 (MQ=255)                                                      aGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAAcc                                                                                               >  2:98023/1‑148 (MQ=255)                                                        cACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGaa                                                                                            <  4:177668/149‑1 (MQ=255)                                                           tGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAAcc                                                                                          >  3:363905/1‑148 (MQ=255)                                                           tGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAAcc                                                                                          >  7:267544/1‑148 (MQ=255)                                                               cgacAGGCTGCACGATAATCAAACTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGCCTCGCACCTTCAGCGTAGCCCGCGACACTAATCCACTTCAAAACACAAACGGCAAGGAACATCAACCACCCCGAAATTAAAACCGCACCAATc                                                                                      >  4:74467/4‑148 (MQ=255)                                                                     gCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCttt                                                                               <  8:267544/149‑1 (MQ=255)                                                                     gCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCttt                                                                               >  8:32857/1‑149 (MQ=255)                                                                      cTGCATGATTATCATTCTATTGAGGTTTTCTTGCTA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCAGTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCtttt                                                                              <  2:231295/149‑1 (MQ=255)                                                                       tGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGGCACTTATGCCCTTCAAATCAGTTACTGCAAGGAACATCAACAACGACGCATATAAAACAGAACAAATCGACCtttt                                                                              >  8:296777/1‑148 (MQ=255)                                                                        gCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTa                                                                             >  2:21554/1‑148 (MQ=255)                                                                                aTCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACg                                                                     >  2:318631/1‑148 (MQ=255)                                                                                   aTTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTaaa                                                                 <  8:159287/149‑1 (MQ=255)                                                                                   aTTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTaa                                                                  >  7:159287/1‑148 (MQ=255)                                                                                    ttCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTaaaa                                                                <  4:122401/149‑1 (MQ=255)                                                                                       tATTGAGCTTTTCTTGCAA‑GTATCGCCCAGCCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACCCCGCATATAAAACCGAACCAAACCACCATTTAAAAATACGTAAAACCa                                                             >  6:378864/1‑149 (MQ=255)                                                                                         tttaGGTTTTCTTGCAA‑GTATCGCCCTGGCTCTCAGCTTCATCGTATCCACCGTCACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAAAAACGCCGCATATAAAACCGAACCTATCCACCTTTTAAAAATACGTAATACCAt                                                            <  3:74467/145‑1 (MQ=255)                                                                                         ttGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCAt                                                            >  6:227283/1‑148 (MQ=255)                                                                                                    ttGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGcacca                                                >  7:306843/1‑149 (MQ=255)                                                                                                    ttGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTGTTAAAAATACGTAAAACCATTACCgcgccc                                                  >  7:60877/1‑145 (MQ=255)                                                                                                    ttGCAA‑GTATAGCCCTGGCACGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGATCATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACGGCGcacca                                                >  7:160501/1‑149 (MQ=255)                                                                                                     tGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTaaaa                                                                          >  4:189960/1‑122 (MQ=255)                                                                                                     tGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTaaaa                                                                          <  3:189960/122‑1 (MQ=255)                                                                                                      gCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACt                                              >  5:68505/1‑149 (MQ=255)                                                                                                      cataagtgtcgcgggctacgctgaaggtgcgagccagggagatacttATGACCTTCAAATCACTTACTGAAATGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTGTTAAAAATACGTAACACCATTACCTCGcaccac                                               >  8:81902‑M2/48‑149 (MQ=255)                                                                                                       ataagtgtcgcgggctacgctgaaggtgcgagccagggcgatacttATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACt                                              >  5:11537‑M2/47‑149 (MQ=255)                                                                                                           gtgtcgcgggctacgctgaaggtgcgagccagggcgatacttATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACttatt                                          <  6:11537‑M2/107‑1 (MQ=255)                                                                                                           GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACttatt                                          >  5:227283‑M1/1‑149 (MQ=255)                                                                                                                gCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAatat                                     <  1:21554/149‑1 (MQ=255)                                                                                                                  ccTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAatat                                     >  7:217997/1‑147 (MQ=255)                                                                                                                  ccTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAatat                                     <  8:217997/147‑1 (MQ=255)                                                                                                                    tGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAAc                                 >  3:233086/1‑149 (MQ=255)                                                                                                                          gCACCATCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTc                           <  4:214196/149‑1 (MQ=255)                                                                                                                           cACCTTCAGAGTAGCCCGCCACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTca                          <  6:1764/149‑1 (MQ=255)                                                                                                                            aCCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTca                          >  5:153761/1‑148 (MQ=255)                                                                                                                                    cGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTCACAGGCAATa                 <  1:98023/149‑1 (MQ=255)                                                                                                                                         cccGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTCACAGGCAATACAttt            <  1:318631/149‑1 (MQ=255)                                                                                                                                            gcgACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCTCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTCACAGGCAATACATTTTTg         <  2:293239/149‑1 (MQ=255)                                                                                                                                                   ttATGCCCTTCAAATCACATACTTCAAGGAAAATCAACCACGCCGCATATAAAACCGAACCAATCAACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTCACAGGCAATACATTTTTGATATAGa  <  7:296777‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CAATCCTGGCCCACGCCACGAACAACAGGCCGAGGAACACCTGCTCGTATATCAGCACTGAGCGTCAGGCTGCAGGATAATCATTCTATTGAGGTTTTCTTGCAA‑GTATCGCCCTGGCTCGCACCTTCAGCGTAGCCCGCGACACTTATGCCCTTCAAATCACTTACTGCAAGGAACATCAACCACGCCGCATATAAAACCGAACCAATCCACCTTTTAAAAATACGTAAAACCATTACCGCGCACCACTTATTAATATCAACTTTTTCACAGGCAATACATTTTTGATATAGA  >  NC_002947/4308190‑4308483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.