New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4893579	23 (0.380)	5 (0.100)	3/210	NT	18.8%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893604	25 (0.520)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter

AGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCAC  >  NC_002947/4893436‑4893722                                                                                                                                                |                                                                                                                                                aGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACg                                                                                                                                            >  5:274548/1‑149 (MQ=255)    cGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTg                                                                                                                                         <  2:279290/149‑1 (MQ=255)    cGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGCGTACGACGAACACGCTGCGGATCTAGACTTTGATCTGAGATTGCCGGGGGCGCGGTGCGCCCCTTTCGCGACACAACGCCGCTCCCACAGTTCCACGCTg                                                                                                                                         <  6:240100/149‑1 (MQ=255)         cGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCGCCCCCAGGGCCACGCTGGcac                                                                                                                                     >  8:266516/1‑148 (MQ=255)                   ctgATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCa                                                                                                                          <  1:81903/149‑1 (MQ=255)                           cGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGCCACAAGGCCGCACCCCCAGGGCCACGCGGGGACAAGGGAAAGCAGTccctgt                                                                                                                  <  1:346541‑M2/149‑7 (MQ=255)                             cTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgg                                                                                                                <  5:277495‑M1/149‑34 (MQ=255)                             cTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTAAGATTGCCGGGGGCGCGTTGCGCCCGTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgg                                                                                                                <  7:271101‑M1/149‑34 (MQ=255)                               ggCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtggga                                                                                                              >  7:339720‑M2/1‑139 (MQ=255)                                gCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtggga                                                                                                              <  3:331171‑M1/148‑36 (MQ=255)                                  gTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCCCAGGGCCACGCTGGCACAACGGAATGCAGTccgtgtgggcgcg                                                                                                           <  7:147414‑M2/149‑14 (MQ=255)                                    gCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGAGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAg                                                                                                                                  <  3:3716/124‑1 (MQ=255)                                    gCCTTTCGGCAACCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTCCCGGGCGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCACCCACAGGGCCACGCAGGCACAAg                                                                                                                                  >  4:3716/1‑124 (MQ=38)                                     ccTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggcc                                                                                                        >  5:36712‑M2/1‑133 (MQ=255)                                      cTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtggga                                                                                                              >  3:89817‑M1/1‑107 (MQ=255)                                      cTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtggga                                                                                                              <  4:89817‑M1/142‑36 (MQ=255)                                         tCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggcctt                                                                                                      >  5:366443‑M2/1‑129 (MQ=255)                                                 ccGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGAt                                                                                            <  7:266516/149‑1 (MQ=255)                                                              acacGCTGCGGATCGAGACTTTGATCTGAGTTTGCGGGGGGCGGGTGGCGCCCCTTTCGCGCCCAACGGCCGCTCCCACCGGGCCACGGTGCCACATGGTAATGCTGGCCCTGTGGGAGGGGCTTTGTGTCGCGATTGGAGGGCAAAGc                                                                               <  2:346541/149‑1 (MQ=255)                                                                   cTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACCGGGCCACGCTGGCACAAGGTAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctcc                                                                          <  4:125834/149‑1 (MQ=255)                                                                    tGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATg                                                                                                                            >  3:160071/1‑98 (MQ=255)                                                                    tGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATg                                                                                                                            <  4:160071/98‑1 (MQ=255)                                                                            gagaCTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCGGGCACAAGGGAATGCAGTCCCTGTGCGAGCGGCCTTGTGTCGCGATTGGCGGGCAAAGCCCTCCCTGAATAcc                                                                 >  7:240767/1‑149 (MQ=255)                                                                             agaCTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAAGCCCCTACCACACCGCCACCCAGGCACAAAGGAATTCAATACCTTTGGGAGCGGCCTTTTGTAGCGATTTTAAGTCAAAACCCACCCTGaaaaacc                                                                >  4:117396/1‑144 (MQ=255)                                                                                  tgtaTCGGAGCTTGCCGGGGTCGCGGTGCCCCCCGTGCGCCACCCACGCCCGCCCCCCCCGGCCCCCGCGGGCCACCGGTATTGCCGGCCTTGGGGGAGGGGCGTGGTGGCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGctct                                                            <  8:147414/145‑1 (MQ=255)                                                                                                 cGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGaaaa                                            >  1:7709/1‑149 (MQ=255)                                                                                                         cgTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGcc                                    <  2:7709/149‑1 (MQ=255)                                                                                                                       cgcgACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCAc                       <  6:274548/148‑1 (MQ=255)                                                                                                                        gcgACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCg                     >  4:263457/1‑149 (MQ=255)                                                                                                                           acacAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTc                  <  2:269921/149‑1 (MQ=255)                                                                                                                               aaGGCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccga                >  5:366443‑M1/1‑18 (MQ=255)                                                                                                                                 ggCCGCTCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaagg            >  5:36712‑M1/1‑16 (MQ=255)                                                                                                                                  gCCGGTCCCACAGGGCCACGCTGGCACAAGTGAATGCAGTCCCTTTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATc           <  3:117396/149‑1 (MQ=255)                                                                                                                                    cgcgCCCACACGGactgcattccgttgtgccagcgtggccctgggggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcac         <  7:147414‑M1/149‑137 (MQ=255)                                                                                                                                     gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAgg                                      <  7:249208/119‑1 (MQ=255)                                                                                                                                     gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAgg                                      >  8:249208/1‑119 (MQ=255)                                                                                                                                     gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAAc        >  3:52361/1‑149 (MQ=255)                                                                                                                                       tCCCACAGGGactgcattcccttgtgccagcgtggccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgcc      >  7:339720‑M1/1‑10 (MQ=255)                                                                                                                                       tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgc       <  3:331171‑M2/148‑114 (MQ=255)                                                                                                                                       tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaag             >  3:89817‑M2/1‑35 (MQ=255)                                                                                                                                       tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaag             <  4:89817‑M2/142‑108 (MQ=255)                                                                                                                                         ccACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccag    <  5:277495‑M2/149‑117 (MQ=255)                                                                                                                                         ccACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaacgggcgcaacgcgcccccggcaatcttagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccag    <  7:271101‑M2/149‑117 (MQ=255)                                                                                                                                           acaGGGactgctttcccttgtccccgcgtggccctgggggtgcggccttgtggcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccagcg  <  1:346541‑M1/149‑144 (MQ=255)                                                                                                                                                |                                                                                                                                                AGCCGTGGCGACACGCTGCTGATCACCGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCAC  >  NC_002947/4893436‑4893722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.