New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4893579	23 (0.380)	5 (0.100)	3/210	NT	18.8%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893604	25 (0.520)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter

CGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTC  >  NC_002947/4893462‑4893750                                                                                                                                               |                                                                                                                                                   cGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGCCACAAGGCCGCACCCCCAGGGCCACGCGGGGACAAGGGAAAGCAGTccctgt                                                                                                                                              <  1:346541‑M2/149‑7 (MQ=255)     ggCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtggga                                                                                                                                          >  7:339720‑M2/1‑139 (MQ=255)        gTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCCCAGGGCCACGCTGGCACAACGGAATGCAGTccgtgtgggcgcg                                                                                                                                       <  7:147414‑M2/149‑14 (MQ=255)           ccTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggcc                                                                                                                                    >  5:36712‑M2/1‑133 (MQ=255)               tCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggcctt                                                                                                                                  >  5:366443‑M2/1‑129 (MQ=255)                       ccGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGAt                                                                                                                        <  7:266516/149‑1 (MQ=255)                                    acacGCTGCGGATCGAGACTTTGATCTGAGTTTGCGGGGGGCGGGTGGCGCCCCTTTCGCGCCCAACGGCCGCTCCCACCGGGCCACGGTGCCACATGGTAATGCTGGCCCTGTGGGAGGGGCTTTGTGTCGCGATTGGAGGGCAAAGc                                                                                                           <  2:346541/149‑1 (MQ=255)                                         cTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACCGGGCCACGCTGGCACAAGGTAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGccctcc                                                                                                      <  4:125834/149‑1 (MQ=255)                                                  gagaCTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCGGGCACAAGGGAATGCAGTCCCTGTGCGAGCGGCCTTGTGTCGCGATTGGCGGGCAAAGCCCTCCCTGAATAcc                                                                                             >  7:240767/1‑149 (MQ=255)                                                   agaCTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAAGCCCCTACCACACCGCCACCCAGGCACAAAGGAATTCAATACCTTTGGGAGCGGCCTTTTGTAGCGATTTTAAGTCAAAACCCACCCTGaaaaacc                                                                                            >  4:117396/1‑144 (MQ=255)                                                        tgtaTCGGAGCTTGCCGGGGTCGCGGTGCCCCCCGTGCGCCACCCACGCCCGCCCCCCCCGGCCCCCGCGGGCCACCGGTATTGCCGGCCTTGGGGGAGGGGCGTGGTGGCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGctct                                                                                        <  8:147414/145‑1 (MQ=255)                                                                       cGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGaaaa                                                                        >  1:7709/1‑149 (MQ=255)                                                                               cgTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGcc                                                                <  2:7709/149‑1 (MQ=255)                                                                                             cgcgACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCAc                                                   <  6:274548/148‑1 (MQ=255)                                                                                              gcgACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCg                                                 >  4:263457/1‑149 (MQ=255)                                                                                                 acacAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTc                                              <  2:269921/149‑1 (MQ=255)                                                                                                        gCCGGTCCCACAGGGCCACGCTGGCACAAGTGAATGCAGTCCCTTTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATc                                       <  3:117396/149‑1 (MQ=255)                                                                                                           gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAgg                                                                  >  8:249208/1‑119 (MQ=255)                                                                                                           gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAgg                                                                  <  7:249208/119‑1 (MQ=255)                                                                                                           gCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAAc                                    >  3:52361/1‑149 (MQ=255)                                                                                                             tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgc                                   <  3:331171‑M2/148‑114 (MQ=255)                                                                                                             tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaag                                         <  4:89817‑M2/142‑108 (MQ=255)                                                                                                             tCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaag                                         >  3:89817‑M2/1‑35 (MQ=255)                                                                                                               ccACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaaggggcgcaacgcgcccccggcaatctcagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccag                                <  5:277495‑M2/149‑117 (MQ=255)                                                                                                               ccACAGGGCCACGCTGGCACAAGGGAATGCAGTccctgtgggagcggccttgtgtcgcgaaacgggcgcaacgcgcccccggcaatcttagatcaaagtctcgatccgcagcgtgttagtcgtacccggcttgccgaaaggcacgccag                                <  7:271101‑M2/149‑117 (MQ=255)                                                                                                                        cACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGc                       >  1:230204/1‑149 (MQ=255)                                                                                                                        cACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGc                       <  3:263457/149‑1 (MQ=255)                                                                                                                         aCGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGcc                      <  7:11223/149‑1 (MQ=255)                                                                                                                          cGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGccc                     >  2:282362/1‑149 (MQ=255)                                                                                                                             tGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCa                               <  5:255116/136‑1 (MQ=255)                                                                                                                             tGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCa                               >  6:255116/1‑136 (MQ=255)                                                                                                                                 acaAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTa               >  1:320966/1‑148 (MQ=255)                                                                                                                                 acaAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCT‑CCCCATCAACCTCCACTGACTGCCCCATGTaca             >  7:35515/1‑149 (MQ=255)                                                                                                                                   aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTacac            >  6:358471/1‑149 (MQ=255)                                                                                                                                   aaGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTacac            >  3:341290/1‑149 (MQ=255)                                                                                                                                        aaTGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCaaa        >  8:155808/1‑148 (MQ=255)                                                                                                                                           gCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCCTGGACACCAAAAAtt    >  6:177648/1‑149 (MQ=255)                                                                                                                                             aGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTc  <  2:230204/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   CGCTGGCGTGCCTTTCGGCAAGCCGGGTACGACTAACACGCTGCGGATCGAGACTTTGATCTGAGATTGCCGGGGGCGCGTTGCGCCCCTTTCGCGACACAAGGCCGCTCCCACAGGGCCACGCTGGCACAAGGGAATGCAGTCCCTGTGGGAGCGGCCTTGTGTCGCGATTGGAGGGCAAAGCCCTCCCTGAATACCGCTCTACCCGACCGCGGAAAACCGAGGCCCAAAGAGGCCCACCGCTCCCCCATCAACCTCCACTGACTGCCCCATGTACACCAAAAATTTC  >  NC_002947/4893462‑4893750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.