New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5581109	37 (0.610)	4 (0.070)	4/252	NT	8.9%	coding (144/1458 nt)	PP_4910	hypothetical protein
	?	NC_002947	= 5581144	47 (0.820)					coding (179/1458 nt)	PP_4910	hypothetical protein

TGTGAACCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCAGTCTCAACGTGCTACTGGGCAACCT  >  NC_002947/5580965‑5581252                                                                                                                                                 |                                                                                                                                                tgtgAACCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGa                                                                                                                                             >  2:364574/1‑149 (MQ=255)  gttaaCCGGCCCACGACAGTCAAAGCAGTGATTTTCTTCCTGTTGATCTATCGCGCCCTGAGTGAACGTCGTGTGCCGCTGGCAGTGCGCATCGCGTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGa                                                                                                                                             <  7:66233/145‑1 (MQ=255)      aCCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGc                                                                                                                                        <  8:30714/149‑1 (MQ=255)             cACGCCAGTCAAACGAGACAATTTCTTCCTGATGATCTTTCGCGCCCTGAGTCAACGTCGTGTGGCGCTGGCACTGCGCATCGCGTGCACCTACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGt                                                                                                                                 <  1:335896/149‑1 (MQ=255)                     tCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCtcatgcatggcctgcttgaactg                                                                                                                          >  6:142186‑M1/1‑125 (MQ=255)                     tCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAg                                                                                                                         <  7:109233/149‑1 (MQ=255)                         aCCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCca                                                                                                                     >  6:362962/1‑149 (MQ=255)                                aaTTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGa                                                                                                              <  2:251392/149‑1 (MQ=255)                                       tcCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGcc                                                                                                       >  2:58276/1‑149 (MQ=255)                                        ccTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCtcatgcatggcctgcttgaactgcaggcccatcacgcaggcg                                                                                                       <  6:174080‑M1/148‑43 (MQ=255)                                         cTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCtcatgcatggcctgcttgaactgcaggcccatcacgcaggcgt                                                                                                      <  1:19565‑M1/148‑44 (MQ=255)                                          tgatgaTCTATCGCGCCCTGAGTCAACGTCGTGTTCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCGGGCGCTGGTGATATACGCCTGCGTGATGGGCCTGCAGTTAAATCACGCCATTCATGAGCAGGCCGAt                                                                                                    >  2:139473/1‑149 (MQ=255)                                            atgatCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCtcatgcatggcctgcttgaactgcaggcccatcacgcaggcgtaga                                                                                                   <  5:142186‑M1/148‑47 (MQ=255)                                            atgatCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGAt                                                                                                    <  3:70001/147‑1 (MQ=255)                                                    tCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTggg                                                                                            <  7:230579/147‑1 (MQ=255)                                                    tCGCGACCTGAGTCAACGTCGTGTGCCTCTGGCACTGCGCAACGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATGTACGCCTGCGTGATGGTCCTGTAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTgg                                                                                             <  4:199491/146‑1 (MQ=255)                                                      gcgcCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGc                                                                                           >  2:192086/1‑146 (MQ=255)                                                          ccTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGcc                                                                                    >  5:214795/1‑149 (MQ=255)                                                              aGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGa                                                                                 <  4:42685/148‑1 (MQ=255)                                                                    cgtcgtGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCa                                                                          <  1:192086/149‑1 (MQ=255)                                                                    cgtcgtGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCa                                                                          <  8:22328/149‑1 (MQ=255)                                                                             ccGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCaa                                                                  >  5:165620/1‑148 (MQ=255)                                                                                   gCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCgg                                                            <  1:364574/148‑1 (MQ=255)                                                                                    cACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCg                                                             <  3:131012/146‑1 (MQ=255)                                                                                    cACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCg                                                             >  4:131012/1‑146 (MQ=255)                                                                                     aCTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCa                                                         >  8:233861/1‑149 (MQ=255)                                                                                                 cTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTgg                                             >  5:60805/1‑149 (MQ=255)                                                                                                 cTGCAACAACATTTTACTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCATTTAAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTTACCACCCAGACTGCAACATCGGCCACCGAGCTGCTgg                                             >  8:67447/1‑149 (MQ=255)                                                                                                    cACCAACTTTTTCGTGGTGGCGCTGGCGCTTGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATTCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGTCCACCCAGACTGCAACATCGGCCACCGAGCTGCTGgtg                                           <  3:101540/148‑1 (MQ=255)                                                                                                    cACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGgtgt                                          >  4:297396/1‑149 (MQ=255)                                                                                                       cAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTcc                                        >  7:65216/1‑148 (MQ=255)                                                                                                       cAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTcc                                        >  6:86057/1‑148 (MQ=255)                                                                                                        aaCATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCaa                                      >  1:366112/1‑149 (MQ=255)                                                                                                               tCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATc                               >  5:30383/1‑149 (MQ=255)                                                                                                               tCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATc                               >  4:368862/1‑149 (MQ=255)                                                                                                                 cTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAgcagg                                                                                                         <  3:251674‑M2/73‑6 (MQ=255)                                                                                                                 cTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAgcagg                                                                                                         >  4:251674‑M2/1‑68 (MQ=255)                                                                                                                 cTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATcc                              <  1:139473/148‑1 (MQ=255)                                                                                                                 cTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCt                             <  5:86057/149‑1 (MQ=255)                                                                                                                    gtggCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTc                            <  6:165620/147‑1 (MQ=255)                                                                                                                    gtggCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCa                           <  3:289692/148‑1 (MQ=255)                                                                                                                              atctggTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCAGTCTCAACGTg                <  3:16124/147‑1 (MQ=255)                                                                                                                                 tggTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCAGTCTCAACGTGCTa             >  2:130499/1‑149 (MQ=255)                                                                                                                                   gTGAGCTACGCCTGCGGGATGGGCCTGCAGTTCAAGCAGGCCATGCTTGAGCAGGCCGATGCCTTGGGCCATAGCCTGACCACCCAGACTTAAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCAGTCTCAAAGTGCTAc            <  6:30383/148‑1 (MQ=255)                                                                                                                                       tCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAgcaggcgtagatcaccagcgccagcgccaccaggaaaatgttggtgcaggcgatgcgcagtgccagcggcacacgacgttgactcagggcgcgatagatcat        <  5:142186‑M2/148‑103 (MQ=255)                                                                                                                                          aCGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAgcaggcgtagatcaccagcgccagcgccaccaggaaaatgttggtgcaggcgatgcgcagtgccagcggcacacgacgttgactcagggcgcgatagatcatcag     <  1:19565‑M2/148‑106 (MQ=255)                                                                                                                                           cGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAgcaggcgtagatcaccagcgccagcgccaccaggaaaatgttggtgcaggcgatgcgcagtgccagcggcacacgacgttgactcagggcgcgatagatcatcagg    <  6:174080‑M2/148‑107 (MQ=255)                                                                                                                                            gCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCAGTCTCAACGTGCTACTGGGCAACCt  >  6:165237/1‑149 (MQ=255)                                                                                                                                             ccTGCtcatgcatggcctgcttgaactgcaggcccatcacgcaggcgtagatcaccagcgccagcgccaccag                                                                             <  3:251674‑M1/73‑69 (MQ=255)                                                                                                                                             ccTGCtcatgcatggcctgcttgaactgcaggcccatcacgcaggcgtagatcaccagcgccagcgccaccag                                                                             >  4:251674‑M1/1‑5 (MQ=255)                                                                                                                                               tGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGctgctg                                              >  6:180202/1‑102 (MQ=255)                                                                                                                                               tGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGctgctg                                              <  5:180202/102‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                TGTGAACCGGCCCACGCCAGTCAAACCAGACAATTTCTTCCTGATGATCTATCGCGCCCTGAGTCAACGTCGTGTGCCGCTGGCACTGCGCATCGCCTGCACCAACATTTTCCTGGTGGCGCTGGCGCTGGTGATCTACGCCTGCGTGATGGGCCTGCAGTTCAAGCAGGCCATGCATGAGCAGGCCGATGCCTTGGGCCAGAGCCTGACCACCCAGACTGCAACATCGGCCACCGAGCTGCTGGTGTCCAACGACATCCTCAGTCTCAACGTGCTACTGGGCAACCT  >  NC_002947/5580965‑5581252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.