New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2397599 =	38 (0.630)	5 (0.090)	5/254	NT	11.7%	coding (2058/3636 nt)	PP_2100	two‑component system sensor protein
	?	NC_002947	2397657 =	39 (0.670)					coding (2000/3636 nt)	PP_2100	two‑component system sensor protein

AGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGTCCTTGAGT  >  NC_002947/2397510‑2397797                                                                                                                                                    |                                                                                                                                             aGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCa                                                                                                                                             <  1:222/149‑1 (MQ=255)  ggAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAg                                                                                                                                            <  3:324753/149‑1 (MQ=255)  attaccagaaagttatggcggcgggctcaccactgatcaaggaccgtccattacggatcaagggccgggacctgaccatctaccactgGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAg                                                                                                                                            >  7:349041‑M1/89‑149 (MQ=255)   gAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGt                                                                                                                                           >  1:378986/1‑149 (MQ=255)           aagtcatggcggcgggctcaccactgatcaaggaccgtccattacggatcaagggccgggacctgaccatctaccactgGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATg                                                                                                                                   >  5:75726‑M1/80‑149 (MQ=255)             ttGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGt                                                                                                                                 >  2:14224/1‑149 (MQ=255)                accccgTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAg                                                                                                                              <  1:324394/144‑1 (MQ=255)                         gcgtcgtcgGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGcc                                                                                                                     >  7:4465/4‑149 (MQ=255)                          cATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGccc                                                                                                                    <  1:309880/149‑1 (MQ=255)                           aTCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCt                                                                                                                   <  5:15533/149‑1 (MQ=255)                             ccgagctctgctgCTTGGCCGGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCtt                                                                                                                  <  7:121665/141‑1 (MQ=255)                               tcgGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGAt                                                                                                               <  8:4465/149‑1 (MQ=255)                                 ggCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATc                                                                                                              <  1:14224/148‑1 (MQ=255)                                    ctgctgCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGt                                                                                                           >  4:92625/1‑148 (MQ=255)                                     tgctgcTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCAAGTGGTAGATGGTCAGGTCCCTGCCCtc                                                                                                                  >  8:121665/1‑139 (MQ=255)                                       gggctGGGCCTGGCGCAGCTCCAGGACCAGTTTGCGGCGTTCGCTGATGTCTATCCAGCCGACGATGATCCCCTGCACATCACCCAGGTAGTCGCGGTACGGCAGGATCCAGTGGTAGATTGTCAGGTCCCGGCCCTTGATCCGTaa                                                                                                         <  6:372831/145‑1 (MQ=255)                                       cttctTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGTTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTaa                                                                                                         <  6:377943/144‑1 (MQ=255)                                         gctTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGa                                                                                                     >  1:188925/1‑149 (MQ=255)                                           ttGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACg                                                                                                   <  7:160929/149‑1 (MQ=255)                                             ggCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACg                                                                                                   <  5:106243/147‑1 (MQ=255)                                              gCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTc                                                                                                <  4:207814/149‑1 (MQ=255)                                               ccTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTcc                                                                                               >  2:43210/1‑149 (MQ=255)                                               ccTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGCCCCTTGATCCGTAATGGACGGTcc                                                                                               >  6:215939/1‑149 (MQ=255)                                                 tGGCGCAGCTCCAGGACCAGTTGGGGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCtt                                                                                             <  2:378986/149‑1 (MQ=255)                                                         cTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAgtg                                                                                     >  2:332851/1‑149 (MQ=255)                                                         cTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAgtg                                                                                     <  1:43210/149‑1 (MQ=255)                                                         cTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCAGCACCTCCCCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAgtg                                                                                     <  8:268484/149‑1 (MQ=255)                                                             aGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGa                                                                                 <  3:134552/149‑1 (MQ=255)                                                                   aGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCccgc                                                                           >  5:125375/1‑149 (MQ=255)                                                                              catctaccactggatcctgccgtaccgcgactccctgggtgaggtgcaggggatcatcggcggctggatcCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACtt                                                                >  5:75726‑M2/71‑149 (MQ=255)                                                                                     aTGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACTGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTgt                                                           <  6:125375/147‑2 (MQ=255)                                                                                     aTGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTgg                                                           <  1:332851/147‑1 (MQ=255)                                                                                       ctggatcctgccgtaccgcgactccctgggtgaggtgcaggggatcatcggcggctggatcCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATAACTTTCTGGTAAt                                                       >  7:349041‑M2/62‑149 (MQ=255)                                                                                        tCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTGGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATc                                                      >  5:11517/1‑149 (MQ=255)                                                                                          gatcctgccgtaccgcgactccctgggtgaggtgcaggggatcatcggcggctggatcCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCg                                                    >  6:174156‑M2/59‑149 (MQ=255)                                                                                             CCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCt                                                 <  5:352169‑M1/149‑1 (MQ=255)                                                                                               aGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTg                                                >  1:369371/1‑148 (MQ=255)                                                                                                          gactccctgggggaggtgcaggggatcatcggcggctggatcCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGc                                    <  6:75726‑M2/107‑1 (MQ=255)                                                                                                               cTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCt                               >  1:191366/1‑149 (MQ=255)                                                                                                                  cACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTc                              <  3:92625/147‑1 (MQ=255)                                                                                                                   ggtgaggtgcaggggatcatcggcggctggatcCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCg                             <  5:174156‑M2/114‑1 (MQ=255)                                                                                                                     cTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAAt                         >  2:155146/1‑149 (MQ=255)                                                                                                                     cTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAAt                         >  3:278076/1‑149 (MQ=255)                                                                                                                     cTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGGCAGGTCCCGGCCCGTGAGCCGTAATGGACGGTCCTGGATCAGTGGTGAGCCCGCCGCCAGGACTTTCTGGTAATCCGCCGGGCTAGGCAGCGCCTGCTCGGCAt                         >  8:317955/1‑149 (MQ=255)                                                                                                                      acACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATc                        <  1:239448/148‑1 (MQ=255)                                                                                                                        aCCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGaa                          <  2:352415/145‑1 (MQ=255)                                                                                                                        aCCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGaa                          >  1:352415/1‑145 (MQ=255)                                                                                                                        aCCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATc                        <  4:278076/147‑1 (MQ=255)                                                                                                                                    gcgGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGt          >  3:212788/1‑149 (MQ=255)                                                                                                                                        tACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGTCCtt      <  5:215939/149‑1 (MQ=255)                                                                                                                                          cGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGTTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGTCCTTGa    <  6:352169/149‑1 (MQ=255)                                                                                                                                          cGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGTCCTTGa    <  6:11517/149‑1 (MQ=255)                                                                                                                                            gCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGTCCTTGAGt  >  5:163392/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                             AGGAACGTGCTCTTGGCGCGGTTGGCATCGTCGGCCTGCTGCTTGGCCTGGCGCAGCTCCAGGACCAGTTGGCGGCGTTCGCTGATGTCGATCCAGCCGCCGATGATCCCCTGCACCTCACCCAGGGAGTCGCGGTACGGCAGGATCCAGTGGTAGATGGTCAGGTCCCGGCCCTTGATCCGTAATGGACGGTCCTTGATCAGTGGTGAGCCCGCCGCCATGACTTTCTGGTAATCCGCCTGGATCTGCCGAGCCTGCTCGGAATCGGCAAACAGGCTGTCCTTGAGT  >  NC_002947/2397510‑2397797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.