New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2945472 = | 36 (0.600) | 4 (0.070) | 3/248 | NT | 8.7% | coding (249/531 nt) | PP_2578 | hypothetical protein |
? | NC_002947 | 2945533 = | 50 (0.880) | coding (310/531 nt) | PP_2578 | hypothetical protein |
CCGCCCACAGTTGGTGGTGCGGCAAGGGCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAAT > NC_002947/2945385‑2945679 | ctcgacctgcccttgctgcttcaggcgccacacggcctccagcgaggcgtagcgccctggtaccgtgtcgaagcgttgcacatccacCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCggg > 2:30819‑M1/88‑149 (MQ=255) cGCCCACAGTTGGTGGTGCGGCAAGGGCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGt < 5:225634/149‑1 (MQ=255) tgCGGCAAGGGCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTc < 4:71512/149‑1 (MQ=255) gCAAGGGCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCa < 4:283702/138‑1 (MQ=255) gCAAGGGCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCa > 3:283702/1‑138 (MQ=255) gCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTAGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTAc > 5:299381/1‑149 (MQ=255) cGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGgc < 7:332308/149‑1 (MQ=255) gCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCGGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGgcgc > 2:242752/1‑149 (MQ=255) cATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCt < 8:1659/149‑1 (MQ=255) cTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGc < 8:277545/148‑1 (MQ=255) cTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGc < 6:6911/148‑1 (MQ=255) gagaCGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCCGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGa < 1:121098/149‑1 (MQ=255) gagaCGGAGTGGTGGGCCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGCACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCTACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTg > 6:68425/1‑147 (MQ=255) ggAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCg > 7:335446/1‑149 (MQ=255) aGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCgtg < 2:299758/149‑1 (MQ=255) tggtggGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGtgtg < 8:263170/149‑1 (MQ=255) tggtggGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGtgtg < 7:25881/149‑1 (MQ=255) ggggCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGgcgc < 6:180629/149‑1 (MQ=255) gggCGCCAACCTGGTGGATGAATTACGCAGCGCCATGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCAGTGTGGCTcc > 3:256478/1‑149 (MQ=255) gcCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGaa < 4:106243/149‑1 (MQ=255) ccAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGGTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAag < 1:242752/149‑1 (MQ=255) ccAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAag < 3:189767/149‑1 (MQ=255) ccAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAag > 1:379985/1‑149 (MQ=255) cAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAag > 4:75970/1‑148 (MQ=255) aaCCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAagca < 4:295864/149‑1 (MQ=255) tGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAgg > 4:248984/1‑149 (MQ=255) gAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGt > 5:299447/1‑149 (MQ=255) aaTTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTc > 1:18447/1‑149 (MQ=255) ttCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTc > 5:349548/1‑147 (MQ=255) ttCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGa < 6:349548/149‑1 (MQ=255) cccgcagcgacgccttgccaccgcccgccgggccgcccaacaggtcctgcagggcgctgcggGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAg > 2:30819‑M2/63‑149 (MQ=255) ccgcagcgacgccttgccaccgcccgccgggccgcccaacaggtcctgcagggcgctgcggGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAggg > 5:286112‑M2/62‑139 (MQ=255) ccgcagcgacgccttgccaccgcccgccgggccgcccaacaggtcctgcagggcgctgcggGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAggg < 6:286112‑M2/78‑1 (MQ=255) ccgcagcgacgccttgccaccgcccgccgggccgcccaacaggtcctgcagggcgctgcggGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGc > 6:96818‑M2/62‑149 (MQ=255) CGCAGCGCCCTGCAGGACCTGTTAGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCt > 6:299381‑M1/1‑149 (MQ=255) CAGCGCCCTGCAGGCCCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGa < 6:188772‑M1/149‑1 (MQ=255) gCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTCCCAGGGCGCTACGCCTCGCTGGCGGCCGTGTGGCGCGTGAAGCAGCAAGGGCAGGTCGAGCTGCGCTGCCGTa > 4:50817/1‑149 (MQ=255) gCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGa > 4:79006/1‑135 (MQ=255) gCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGa < 3:79006/135‑1 (MQ=255) gCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTa > 1:188839/1‑149 (MQ=255) cAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTAc < 8:335446/149‑1 (MQ=255) aCCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGt > 6:283487/1‑147 (MQ=255) aCCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCa < 3:75970/149‑1 (MQ=255) cTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCa > 5:240704/1‑147 (MQ=255) cTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCa < 6:240704/147‑1 (MQ=255) ttGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTg > 7:4232/1‑147 (MQ=255) cccGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGAc > 6:154263/1‑144 (MQ=255) cccGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGAc < 5:154263/144‑1 (MQ=255) cggcggGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCg > 4:164552/1‑149 (MQ=255) cggcggGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCg < 2:18447/149‑1 (MQ=255) gcgggcggTGGCTAGTCGGCGCTGCGGGTGGATGTGAAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGa < 4:256478/149‑1 (MQ=255) ggcggTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGcc > 8:337998/1‑121 (MQ=255) ggcggTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGcc < 7:337998/121‑1 (MQ=255) cggTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGacaaca < 5:188772/149‑1 (MQ=255) ggTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTc > 7:173571/1‑105 (MQ=255) ggTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTc < 8:173571/105‑1 (MQ=255) gTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGc < 5:283487/149‑1 (MQ=255) cAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCa > 6:219133/1‑149 (MQ=255) ggGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAAt < 5:96818‑M2/147‑1 (MQ=255) | CCGCCCACAGTTGGTGGTGCGGCAAGGGCAGAGCGGCCTGGCCATTCTGGAGACGGAGTGGTGGGGCGCCAACCTGGTGGATGAATTCCGCAGCGCCCTGCAGGACCTGTTGGGCGGCCCGGCGGGCGGTGGCAAGGCGTCGCTGCGGGTGGATGTGCAACGCTTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCTGACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAAT > NC_002947/2945385‑2945679 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |