New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4644814	52 (0.860)	3 (0.050)	3/256	NT	5.9%	intergenic (‑124/‑66)	PP_4109/PP_5658	hypothetical protein/hypothetical protein
	?	NC_002947	= 4644882	45 (0.770)					coding (3/483 nt)	PP_5658	hypothetical protein

GCAGGCCGTCTCTGTTGTCTCTACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGACTTCAACAGCTACCT  >  NC_002947/4644739‑4645025                                                                                                                                                |                                                                                                                                                gCAGGCCGTCTCTGTTGTCTCTACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGcccc                                                                                                                                             <  3:16937‑M2/148‑5 (MQ=255) gCAGGCCGTCTCTGTTGTCTCTACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGcccc                                                                                                                                             <  5:363984‑M2/148‑5 (MQ=255)               ttgtCTCTACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACATGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGc                                                                                                                              >  6:283630/1‑149 (MQ=255)                 gtCTCTACTGGCCTGTGCGCGGGCAGGCCCGCCCCCACAGCGATCGGATGGTGCTTGGGGGATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGcc                                                                                                                             <  8:246736/148‑1 (MQ=255)                 gtCTCTACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGccc                                                                                                                            >  7:160866/1‑149 (MQ=255)                  tctcTACTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCAGGTCTGCCTGGGAAGAGGCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGccc                                                                                                                            <  2:319333/148‑1 (MQ=255)                    tctACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGAATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTATGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCccgcc                                                                                                                         >  2:341265/1‑149 (MQ=255)                     ctACTGGCCTCTTCGCGGGCACGCCCGATCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCAGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCccgcc                                                                                                                         >  4:233403/1‑148 (MQ=255)                      tACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGa                                                                                                                       >  2:14406/1‑149 (MQ=255)                      tACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCCGTTAGGGTGCCCGCCGa                                                                                                                       >  8:183127/1‑149 (MQ=255)                           gCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGc                                                                                                                    <  4:16937/147‑1 (MQ=255)                            ccTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCAGCCGATGCACg                                                                                                                 >  4:214631/1‑149 (MQ=255)                               ctTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGcca                                                                                                              >  6:356884/1‑149 (MQ=255)                                  cgcgGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGccac                                                                                                             <  6:363984/147‑1 (MQ=255)                                   gcgGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGccacac                                                                                                           >  1:81453/1‑148 (MQ=255)                                   gcgGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGccacac                                                                                                           <  8:276874/148‑1 (MQ=255)                                           gCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAg                                                                                                   >  1:198860/1‑148 (MQ=255)                                           gCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGGCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAgg                                                                                                  <  5:245505/149‑1 (MQ=255)                                                  cccACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTCAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGa                                                                                           <  7:174533/149‑1 (MQ=255)                                                    cacaGCGATCGCTTGTTGCTTGGGGTATGCAGGGCACCTTTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGt                                                                                         <  1:14017/149‑1 (MQ=255)                                                     acaGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGt                                                                                         >  1:238500/1‑148 (MQ=255)                                                               cATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCg                                                                                 >  3:281534/1‑146 (MQ=255)                                                                     gCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAAcccc                                                                        >  1:133367/1‑149 (MQ=255)                                                                     gCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAAccc                                                                         <  1:366945/148‑1 (MQ=255)                                                                      cTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGccccaagcaacatgcgatcgctgtgggagcgggcgtgcccgcgaagaggccagtagagacaacagagacggcct                                                                       <  5:322713‑M2/149‑75 (MQ=255)                                                                         ggggTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGccccaagcaacatgcgatcgctgtgggagcgggcgtgcccgcgaagaggccagtagagacaacagagacggcctgcc                                                                    <  8:254117‑M2/149‑78 (MQ=255)                                                                         gcggTAGGCAGGGCACCTGTGCGGCGCGGGCCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTg                                                                      <  4:281534/145‑1 (MQ=255)                                                                            gTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGc                                                                 >  5:39279/1‑149 (MQ=255)                                                                                 cAGGACACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGAcg                                                            >  2:239383/1‑148 (MQ=255)                                                                                  aGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGAACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTCATCGCCGACCt                                                           >  7:13974/1‑149 (MQ=255)                                                                                    ggCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGt                                                         <  1:14406/149‑1 (MQ=255)                                                                                       aCCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCg                                                      <  3:214631/149‑1 (MQ=255)                                                                                        ccTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGccccaagcaacatgcgatcgctgtgggagcgggcgtgcccgcgaagaggccagtagagacaacagagacggcctgccgtactctacgcgccc                                                     >  6:322713‑M2/1‑57 (MQ=255)                                                                                         cTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCGCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGaa                                                    <  5:283630/149‑1 (MQ=255)                                                                                         cTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGaa                                                    <  1:341265/149‑1 (MQ=255)                                                                                            tgAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGt                                                  <  3:233403/148‑1 (MQ=255)                                                                                            tgAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTc                                                 <  2:238500/149‑1 (MQ=255)                                                                                                       tCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCt                                      <  2:198860/149‑1 (MQ=255)                                                                                                             tGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAACCGCCTGTCCCt                                >  7:274695/1‑149 (MQ=255)                                                                                                             tGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCt                                >  7:347462/1‑149 (MQ=255)                                                                                                               ggAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTc                               >  3:146467/1‑148 (MQ=255)                                                                                                                  agagCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGc                           >  4:162842/1‑149 (MQ=255)                                                                                                                  agagCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCCGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGc                           <  7:183127/149‑1 (MQ=255)                                                                                                                     gCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCcg                        >  6:327622/1‑149 (MQ=255)                                                                                                                         ggCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCcgtcgt                    <  8:347462/149‑1 (MQ=255)                                                                                                                            cTGCATCAGGTGATCTGAATGCCCCGTTCTGTTAGGGTGCCGGCGGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGATCGCCTGATCGCCGACGTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGa                 <  8:13974/149‑1 (MQ=255)                                                                                                                              gCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACCCCACACGAGGATCCCGAGTGAGCGCCGAAGCACCCCTGATCGCCGACCTGTTCGATGTCGACAATCGCCTGTCCGTCAAGCCCGTCGTGGACt               >  5:358764/1‑149 (MQ=255)                                                                                                                                   aGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGACTTCaa           >  4:71318/1‑148 (MQ=255)                                                                                                                                     gTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCCCACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGACTTCAACAg        >  2:262167/1‑149 (MQ=255)                                                                                                                                     gTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCACCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGACTTCAACAg        >  5:44244/1‑149 (MQ=255)                                                                                                                                             aaTGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGACTTCAACAGCTACCt  <  2:81453/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                GCAGGCCGTCTCTGTTGTCTCTACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGCGATCGCATGTTGCTTGGGGTATGCAGGGCACCTGTGAGGGGCGGGTCTGCCTGGGAAGAGCCGGGCCTGCAACAGGTGATCTGAATGCCCCGATCTGTTAGGGTGCCCGCCGATGCACGCCACACCACACGAGGATCCCGAGTGAGCGCCGAAGAACCCCTGATCGCCGACCTGTTCGAAGTCGACAAACGCCTGTCCCTCAAGCCCGTCGTGGACTTCAACAGCTACCT  >  NC_002947/4644739‑4645025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.