| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3947414 = | 27 (0.790) | 6 (0.190) | 5/272 | 3.7 | 17.3% | coding (635/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | 3947505 = | 32 (1.000) | coding (544/1797 nt) | PP_3483 | type II secretion system protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGCCGCCGACCTGGCCACCTTCCTGGCCCGTCATGAAGAAAGCTTCCACGCAGTCGATGCCCTTGACCACGACGCCGAAGCCAGCAGCGAGGGCGACCCGCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGTGGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3947567‑3947414‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggtcaaGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAACACG > NC_002947/3947505‑3947647 ACGCCGCCGACCTGGCCACCTTCCTGGCCCGTCATGAAGAAAGCTTCCACGCAGTCGATGCCCTTGACCACGACGCCGAAGCCAGCAGCGAGGGCGACCCGCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGT < 7:174494/148‑1 CCTTGACCACGACGCCGAAGCCAGCAGCGAGGGCGACCCGCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTC > 7:156697/1‑148 CTTGACCACGACGCCGAAGCCAGCAGCGAGGGCGACCCGCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCG > 4:87885/1‑148 CTTGACCACGACGCCGAAGCCAGCAGCGAGGGCGACCCGCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCG > 6:165405/1‑148 GCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTAC < 8:156697/148‑1 CAGCGAAGACCAGAGCCGCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGG < 5:165405/147‑1 GCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGGCGAAGGGGTCGGCGA < 2:84857/148‑1 GTGGTCAAGGGCATCGACTGCGTGGCAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGTCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGCTCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAAC > 5:52566/1‑148 TCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAACACG < 8:72053/147‑1 ACGCCGCCGACCTGGCCACCTTCCTGGCCCGTCATGAAGAAAGCTTCCACGCAGTCGATGCCCTTGACCACGACGCCGAAGCCAGCAGCGAGGGCGACCCGCTGCAACGCCTGTCGCTGGCCAGTATCAGCGAAGACCAGAGCCGCGTGGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3947567‑3947414‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggtcaaGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAACACG > NC_002947/3947505‑3947647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |