New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947414 =	27 (0.790)	6 (0.190)	5/272	3.7	17.3%	coding (635/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947505 =	32 (1.000)					coding (544/1797 nt)	PP_3483	type II secretion system protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAACACG  >  NC_002947/3947359‑3947647                                                                                                                                                   |                                                                                                                                               gTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGCCCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAgg                                                                                                                                               <  2:162153/148‑1 (MQ=255)            tGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGCCTGc                                                                                                                                    >  5:34047/1‑148 (MQ=255)              gCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGt                                                                                                                                  <  1:42734/148‑1 (MQ=255)                  gCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGGCGTGGGCAAGGGACTCGACTGCGAGGaa                                                                                                                              >  7:82417/1‑148 (MQ=255)                  gCAGCTGGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGGCGCCCTCGCTGCTGGCTGCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGaa                                                                                                                              <  5:7447/148‑1 (MQ=255)                     gCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCt                                                                                                                           >  6:98157/1‑148 (MQ=255)                           gggCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTttcttc                                                                                                                     >  1:205940/1‑148 (MQ=255)                               gtcgtACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGa                                                                                                                 >  2:112962/1‑148 (MQ=255)                                           ggAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAg                                                                                                     <  2:205940/148‑1 (MQ=255)                                                       tttGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTcg                                                                                         >  7:72053/1‑148 (MQ=255)                                                              aCGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGt                                                                                  >  7:174494/1‑148 (MQ=255)                                                                     tctGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAg                                                                           >  1:138235/1‑148 (MQ=255)                                                                     tctGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAg                                                                           >  2:94090/1‑148 (MQ=255)                                                                        ggTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGt                                                                         >  6:176938/1‑147 (MQ=255)                                                                         gTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGt                                                                         >  5:12768/1‑146 (MQ=255)                                                                            ttCGCTGATACTGGCCAGCGACAGGCGTTGCAACGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAgc                                                                    >  6:165975/1‑148 (MQ=255)                                                                                         gCCAGCGACAGGCGGTGCAGCGGGGCGCCCTCGCGGCTGGCGTCGGCGGCGTGGTCAAGGGCAGCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCa                                                       <  1:97589/148‑1 (MQ=255)                                                                                                   ggCGGTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGGGGAAGCTGTCTTCATGACGGGCCAGGAAGGGGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACgtcgtc                                             <  4:51710/148‑1 (MQ=255)                                                                                                          cAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATcca                                       <  6:70996/147‑1 (MQ=255)                                                                                                            gCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATccaggc                                    <  5:98157/148‑1 (MQ=255)                                                                                                            gCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGACccaggc                                    <  1:94090/148‑1 (MQ=255)                                                                                                               ggTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATccaggccag                                 <  8:162136/148‑1 (MQ=255)                                                                                                                   gCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGa                             >  3:49337/1‑148 (MQ=255)                                                                                                                   gCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGa                             >  4:182995/1‑148 (MQ=255)                                                                                                                          ctgctgGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCGAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCggg                        <  6:54767/146‑1 (MQ=255)                                                                                                                           tgctgGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATACAGGCCAGGCGAGCGGGGt                      >  8:76446/1‑147 (MQ=255)                                                                                                                              tgGCTTCGGCGTCGTTGTCAAGTGCATCTACTGCTTTGAAGCTTTCTTCATGACGGGCCAGGAATGTGGCCAGTTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGTCGAGCGGGGTCGaa                  <  4:60842/148‑1 (MQ=255)                                                                                                                              tgGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCg                    <  1:112962/146‑1 (MQ=255)                                                                                                                               ggCTTCGGCGTCGTGGTCAAGGGCATCGACGGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGGGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGGCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAg                 <  4:6542/148‑1 (MQ=255)                                                                                                                                 cTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAggg               <  2:92599/148‑1 (MQ=255)                                                                                                                                      gCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGAGTCGAAGGGGTCg           <  3:166193/147‑1 (MQ=255)                                                                                                                                      gCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGAGTCGAAGGGGGCg           <  3:166195/147‑1 (MQ=255)                                                                                                                                         gcgtGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGGCGAAGGGGTCGGCGa       <  2:84857/147‑1 (MQ=255)                                                                                                                                           gtGGTCAAGGGCATCGACTGCGTGGCAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGTCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGCTCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAac     >  5:52566/1‑148 (MQ=255)                                                                                                                                               tCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAACACg  <  8:72053/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCGGCGGCGTGGGCCAGGTAAAGCGGCGCGCCTTGCAGTACGTCGTCGATCCAGGCCAGGCGAGCGGGGTCGAAGGGGTCGGCGAACACG  >  NC_002947/3947359‑3947647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.