New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947414 =	27 (0.790)	6 (0.190)	5/272	3.7	17.3%	coding (635/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3947505 =	32 (1.000)					coding (544/1797 nt)	PP_3483	type II secretion system protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGCGAAGGCGCTGCCACTGGCCTTGCCGGCACCGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCG  >  NC_002947/3947268‑3947560                                                                                                                                                   |                                                                                                                                                   cGGCGAAGGCGCTGCCACTGGCCTTGCCGGCACCGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGttt                                                                                                                                                   <  1:82886/148‑1 (MQ=255)                cACTGGCCTTGCCGGCACCGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTg                                                                                                                                    <  1:168543/148‑1 (MQ=255)                cACTGGCATTGACGGAACCGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTg                                                                                                                                    >  3:60842/1‑148 (MQ=255)                       cTTGCCGGCACCGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCg                                                                                                                             >  7:162136/1‑148 (MQ=255)                                  cGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGc                                                                                                                  <  1:22290/148‑1 (MQ=255)                                                 cGATGCGGTACTTGATGGGCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTg                                                                                                   <  5:146118/148‑1 (MQ=255)                                                  gATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGtt                                                                                                    >  1:31874/1‑146 (MQ=255)                                                    tGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAg                                                                                                <  3:171213/148‑1 (MQ=255)                                                                     aGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCgctgc                                                                               >  5:70996/1‑148 (MQ=255)                                                                          cTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCt                                                                          >  4:166193/1‑148 (MQ=255)                                                                          cTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCt                                                                          >  4:166195/1‑148 (MQ=255)                                                                           tGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCCCGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCtt                                                                         >  3:6542/1‑148 (MQ=255)                                                                               cAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGc                                                                     <  4:1946/148‑1 (MQ=255)                                                                               cAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGc                                                                     >  5:179597/1‑148 (MQ=255)                                                                                  tCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGcgtc                                                                  >  4:50070/1‑148 (MQ=255)                                                                                     tGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGcgtcgt                                                                <  3:50070/147‑1 (MQ=255)                                                                                      gCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTgg                                                              >  1:84857/1‑148 (MQ=255)                                                                                            gTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGCCCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAgg                                                        <  2:162153/148‑1 (MQ=255)                                                                                                       tGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGCCTGc                                             >  5:34047/1‑148 (MQ=255)                                                                                                         gCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGt                                           <  1:42734/148‑1 (MQ=255)                                                                                                             gCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGGCGTGGGCAAGGGACTCGACTGCGAGGaa                                       >  7:82417/1‑148 (MQ=255)                                                                                                             gCAGCTGGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGGCGCCCTCGCTGCTGGCTGCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGaa                                       <  5:7447/148‑1 (MQ=255)                                                                                                                gCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCt                                    >  6:98157/1‑148 (MQ=255)                                                                                                                      gggCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTttcttc                              >  1:205940/1‑148 (MQ=255)                                                                                                                          gtcgtACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGa                          >  2:112962/1‑148 (MQ=255)                                                                                                                                      ggAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAg              <  2:205940/148‑1 (MQ=255)                                                                                                                                                  tttGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTcg  >  7:72053/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CGGCGAAGGCGCTGCCACTGGCCTTGCCGGCACCGTTGAGCACGCCGTCGATGCGGTACTTGATGGTCAGGCCCTGGCCAGTCATGCCCAGGTGGATGTCGCTGGCGTGCAGCTTGAGGGCGTCGTACAGGGTGGAGTTGACCAGTTTGACCACGCGGCTCTGGTCTTCGCTGATACTGGCCAGCGACAGGCGTTGCAGCGGGTCGCCCTCGCTGCTGGCTTCGGCGTCGTGGTCAAGGGCATCGACTGCGTGGAAGCTTTCTTCATGACGGGCCAGGAAGGTGGCCAGGTCG  >  NC_002947/3947268‑3947560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.