New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 283836	72 (1.160)	6 (0.100)	5/252	NT	8.0%	coding (1287/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	= 283862	70 (1.190)					coding (1313/2004 nt)	betT‑II	choline/carnitine/betaine transporter

GTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCA‑‑‑‑CCTCGGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/283722‑283836 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgacAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAAGAACACGAAGCTGATGAACACCGTGGTGGCGATCACTGCCTTGCTCCAGGGGTAGGTTTCCAGCAGCAGGTACAGGCTCATCGATGGGTTGTCCAACGCCGA  <  NC_002947/283862‑283717                                                                                                                                                                                                                                                                            GTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAAGGGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCACCACCCTTGGCCGACAAGGTCGACAGCACCACGGTGCCCGAGTC                                                                                                                       >  1:106631/1‑149     GACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCA‑‑‑‑CCTCGGCCGACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGG                                                                                                               <  3:333548/148‑1                GATGCGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTGCATCAGCTTCGTGTTCTTCGTCACCACCCTTGGCCGACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAA                                                                                                        <  6:155112/148‑1                GATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGGTCTTCGTCACCACCCTTGGCCGACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAA                                                                                                        <  2:106631/148‑1                                           CTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCA‑‑‑‑CCTCGGCCGACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAAGAAC                                                                                                    >  3:106731/1‑121                                           CTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCA‑‑‑‑CCTCGGCCGACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAAGAAC                                                                                                    <  4:106731/121‑1                                                                                                                    CCGACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAAGAACACGAAGCTGATGAACACCGTGGTGGCGATCACTGCCTTGCTCCAGGGGTAGGTTTCCAGCAGCAGGTACAGGCTCATCGATGGGTTGTCCAACGCC    >  6:243951/1‑149                                                                                                                      GACAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAAGAACACGAAGCTGATGAACACCGTGGTGGCGATCACTGCCTTGCTCCAGGGGTAGGTTTCCAGCAGCAGGTACAGGCTCATCGATGGGTTGTCCAACGCCGA  >  4:359561/1‑149                                                                                                                                                                                                                                                                            GTTGGACAACCCATCGATGAGCCTGTACCTGCTGCTGGAAACCTACCCCTGGAGCAA‑GGCAGTGATCGCCACCACGGTGTTCATCAGCTTCGTGTTCTTCGTCA‑‑‑‑CCTCGGCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/283722‑283836 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgacAAGGTCGACAGCACCACGGTGCCCGAGTCGGCCGAGGTGACGAAGAACACGAAGCTGATGAACACCGTGGTGGCGATCACTGCCTTGCTCCAGGGGTAGGTTTCCAGCAGCAGGTACAGGCTCATCGATGGGTTGTCCAACGCCGA  <  NC_002947/283862‑283717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.