New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	319049 =	61 (0.980)	6 (0.100)	5/250	NT	10.2%	coding (693/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	319095 =	48 (0.820)					coding (647/1815 nt)	PP_0264	sensor histidine kinase

TGGTGGTCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/319203‑319049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGG  >  NC_002947/319095‑319242                                                                                                                                                                                                                                                                                                                 TGGTGGTCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAG                                                                                                                                                            >  7:316750/1‑149   GTGGTCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCG                                                                                                                                                          >  2:310594/1‑149   GTGGTCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAG                                                                                                                                                            <  7:6225/147‑1      GTCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCA                                                                                                                                                       <  4:333813/149‑1       TCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGC                                                                                                                                                         <  6:375200/146‑1       TCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGC                                                                                                                                                         >  5:375200/1‑146                           ACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCA                                                                                                                                                       <  7:126722/128‑1                           ACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCA                                                                                                                                                       >  8:126722/1‑128                                                                                                          CCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACT                                                   >  1:387878/1‑149                                                                                                          CCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAG                                                          >  7:290275/1‑142                                                                                                          CCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAG                                                          <  8:290275/142‑1                                                                                                             ACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTT                                                                        <  5:232887/125‑1                                                                                                             ACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTT                                                                        >  6:232887/1‑125                                                                                                                                          ACCGACGCCGAGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGC                    <  2:387878/148‑1                                                                                                                                                    AGCGCCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTTGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACG         <  7:106887/149‑1                                                                                                                                                       gcaAGTCGGGCCGCCAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCCCCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCC      >  6:32313/4‑149                                                                                                                                                        CCAGTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCG     >  7:343130/1‑149                                                                                                                                                           GTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGG  <  3:91736/149‑1                                                                                                                                                                                                                                                                                                                 TGGTGGTCAAAGTCGATCTCGACCACACCGAAACCCTGTGGGGCCGTACGCCCGAGCAGCTGTTGCTGACCGATCACAATGGCGTGGTCATCCTGACTTCGCGGCCCGACTGGCGCTTCCGTGCTACCCGCACGCTGACCGACGCCGAGCGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/319203‑319049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgccagTCGGGCCGCGAAGTCAGGATGACCACGCCATTGTGATCGGTCAGCAACAGCTGCTCGGGCGTACGGCCCCACAGGGTTTCGGTGTGGTCGAGATCGACTTTGACCACCAGCACGCCGACGATCCGCTCGCGGTCGCGCACGGCCGCGG  >  NC_002947/319095‑319242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.