| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 319383 = | 52 (0.840) | 4 (0.070) | 4/260 | NT | 7.7% | coding (359/1815 nt) | PP_0264 | sensor histidine kinase |
| ? | NC_002947 | 319427 = | 45 (0.740) | coding (315/1815 nt) | PP_0264 | sensor histidine kinase | |||||
TTCTCGGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/319533‑319383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcACCGGTCTTCTGCACGATGTCCTTGAGCAGGCGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAATTTGCGGCAAGGTCTCGTAGCGGTGCAGGGTGCCGAGCA > NC_002947/319427‑319572 TTCTCGGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTG < 1:33608/149‑1TTCTCGGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTG < 2:242728/149‑1TTCTCGGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTG > 4:224325/1‑149TTCTCGGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTG < 7:211032/149‑1 GGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGC < 1:142759/146‑1 GGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGC < 5:294478/146‑1 TTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATCTACCTGATGGACGTCAGCGGCAACACCTTGG > 1:70998/1‑107 TTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATCTACCTGATGGACGTCAGCGGCAACACCTTGG < 2:70998/107‑1 GGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGCGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAA > 5:279301/1‑143 GGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGCCGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAA < 6:279301/143‑1 GAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGTGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAAT > 7:361228/1‑149 GACGTCAGCGGCAACACCTTGGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGTGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAATTTGCGGCAAGGTCTCGT < 8:361228/148‑1 GGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGCGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAATTTGCGGCAAGGTCTCGTAGCGGTGCAGGGTGCCGAGCA < 3:302091/149‑1 GGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGCGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAATTTGCGGCAAGGTCTCGTAGCGGTGCAGGGTGCCGAG > 2:354233/1‑147 GGCACCGGTCTTCTGCACGATGTCCTTGAGCAGGCGGTGGGCGGTGGTCACCGCTTCCAGGCGGAAAGGGGCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAATTTGCGGCAAGGTCTCGTAGCGGTGCAGGGTGCCGAGCA < 6:358382/149‑1 TTCTCGGCGACTTGCCAGCGCTGCGTGGCGTGCTGGCCGACCCTTTCCGCCTGGAAGCGGTGACCAACGCCAACCGCCTGCTCAAGGACATCGTGCAGAAGACCGGTGCCGAGGTGATGTACCTGATGGACGTCAGCGGCAACACCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/319533‑319383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcACCGGTCTTCTGCACGATGTCCTTGAGCAGGCGGTTGGCGTTGGTCACCGCTTCCAGGCGGAAAGGGTCGGCCAGCACGCCACGCAGCGCTGGCAAGTCGCCGAGAATTTGCGGCAAGGTCTCGTAGCGGTGCAGGGTGCCGAGCA > NC_002947/319427‑319572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |