| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 491380 | 57 (0.920) | 4 (0.070) | 4/258 | NT | 6.6% | coding (1041/2823 nt) | lptD | LPS‑assembly protein LptD |
| ? | NC_002947 | = 491403 | 58 (0.960) | coding (1018/2823 nt) | lptD | LPS‑assembly protein LptD | |||||
GCTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/491232‑491380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCTGGCGCCTAACTACGACGCCACGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCAGTTCGGCGGCGCCTACTTGAACGACAAGAACGACGACCGCAAA < NC_002947/491403‑491257 GCTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAAC < 1:31374/149‑1GCTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAAC > 3:89503/1‑149 GGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACCTGGCGCCTAACTACGACGCCACGTTGTAC < 5:18641/149‑1 AAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACCTGGCGCCTAACTACGACGCCACGTT < 5:96829/94‑1 AAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACCTGGCGCCTAACTACGACGCCACGTT > 6:96829/1‑94 CATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCAGTTCGGCGGCGCCTACTTGAACGAC > 6:332953/1‑148 AACCTGGCGCCTAACTACGACGCCACGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCAGTTCGGCGGCGCCTACTTGAACGACAAGAACGACGACCGCA > 8:191039/1‑148 AACCTGGCGCCTAACTACGACGCCACGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCA < 3:83974/107‑1 AACCTGGCGCCTAACTACGACGCCACGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCA > 4:83974/1‑107 ACCTGGCGCCTAACTACGACGCCACGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCAGTTCGGCGGCGCCTACTTGAACGACAAGAACGACGACCGCAAA < 6:85189/149‑1 GCTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/491232‑491380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCTGGCGCCTAACTACGACGCCACGTTGTACCCGCGTTACATGGCCAAGCGCGGCCTGCTGATGGAAGGCGAGTTCCGCTACCTGACACCTTCCAGCGAAGGCCAGTTCGGCGGCGCCTACTTGAACGACAAGAACGACGACCGCAAA < NC_002947/491403‑491257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |