New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 491380	57 (0.920)	4 (0.070)	4/258	NT	6.6%	coding (1041/2823 nt)	lptD	LPS‑assembly protein LptD
	?	NC_002947	= 491403	58 (0.960)					coding (1018/2823 nt)	lptD	LPS‑assembly protein LptD

GCTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGGTGTATAGAACA  >  NC_002947/491232‑491525                                                                                                                                                     |                                                                                                                                                    gcTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAAC                                                                                                                                                     >  3:89503‑M1/1‑149 (MQ=255) gcTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAAC                                                                                                                                                     <  1:31374‑M1/149‑1 (MQ=255)  cTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGTTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACg                                                                                                                                                    >  6:68605/1‑149 (MQ=255)  cTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACg                                                                                                                                                    >  7:130556/1‑149 (MQ=255)   tGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGt                                                                                                                                                   >  2:263532/1‑149 (MQ=255)   tGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGt                                                                                                                                                   >  8:219079/1‑149 (MQ=255)     aTCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTgg                                                                                                                                                 >  1:283112/1‑149 (MQ=255)     aTCTTTGTAATCAGTCTGAGCTTTGCGGTCGTCGTTCTTGTCGTTAAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCATGTAGCTGAACTCGCGTTCCTTGAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTg                                                                                                                                                  <  6:6778/148‑1 (MQ=255)       cTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGcg                                                                                                                                               >  3:759/1‑149 (MQ=255)          tGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGcgt                                                                                                                                              <  1:263532/147‑1 (MQ=255)             aaTCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAg                                                                                                                                         >  7:191039/1‑149 (MQ=255)                     tGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGgagc                                                                                                                                 >  6:261966/1‑149 (MQ=255)                          tttGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGgt                                                                                                                            <  6:85189‑M2/149‑3 (MQ=255)                            tGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGgtt                                                                                                                           >  8:191039‑M2/1‑145 (MQ=255)                               ggTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACctggcgcctaactacgacgccacgttgtac                                                                                                                       <  5:18641‑M1/149‑31 (MQ=255)                               ggTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAag                                                                                                                       <  7:219079/149‑1 (MQ=255)                                   gtcgtTCTTGTCGTTCAAGTATGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAagtag                                                                                                                    <  7:337456/148‑1 (MQ=255)                                    tcgtTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAgtagta                                                                                                                  <  4:173179/149‑1 (MQ=255)                                            gTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACCTGGCGCCTAACTACGACGCCACgttgtacccgcgttacatg                                                                                                           >  6:332953‑M2/1‑129 (MQ=255)                                             tCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGAc                                                                                                         >  6:209465/1‑149 (MQ=255)                                               gTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTACCGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGAc                                                                                                         >  7:144278/1‑147 (MQ=255)                                               gTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGAc                                                                                                         >  4:368231/1‑147 (MQ=255)                                                ttCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGaa                                                                                                                        >  1:24165/1‑131 (MQ=255)                                                ttCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGaa                                                                                                                        <  2:24165/131‑1 (MQ=255)                                                ttCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAg                                                                                                      >  1:144269/1‑149 (MQ=255)                                                          cgccgcCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCg                                                                                            <  4:759/149‑1 (MQ=255)                                                             cgccgAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGgt‑‑g                                                                                       <  5:68605/149‑1 (MQ=255)                                                                   aCTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCgctg                                                                                 >  8:344182/1‑149 (MQ=255)                                                                     tGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGgtt                                                                                                                           <  3:83974‑M2/107‑4 (MQ=255)                                                                     tGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGgtt                                                                                                                           >  4:83974‑M2/1‑104 (MQ=255)                                                                        ccTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTTCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGt                                                                            <  2:24802/149‑1 (MQ=255)                                                                         cTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTg                                                                           <  5:85189/149‑1 (MQ=255)                                                                          ttCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGc                                                                          >  8:315014/1‑149 (MQ=255)                                                                                  aaGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACctggcgcctaactacgacgccacgtt                                                                                                                           >  6:96829‑M1/1‑68 (MQ=255)                                                                                  aaGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACctggcgcctaactacgacgccacgtt                                                                                                                           <  5:96829‑M1/94‑27 (MQ=255)                                                                                   aGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAgg                                                                 <  4:89503/149‑1 (MQ=255)                                                                                     gtgtCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGggc                                                               >  2:352230/1‑149 (MQ=255)                                                                                     gtgtCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGggc                                                               <  7:323793/149‑1 (MQ=255)                                                                                        tCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGggcggc                                                            >  2:318636/1‑149 (MQ=255)                                                                                        tCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGggcgg                                                             <  5:160801/148‑1 (MQ=255)                                                                                          aGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAg                                                          >  2:88128/1‑149 (MQ=255)                                                                                          aGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAg                                                          >  6:138641/1‑149 (MQ=255)                                                                                            gTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAgg                                                         >  3:111338/1‑148 (MQ=255)                                                                                                cGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAAcc                                                    <  2:144269/149‑1 (MQ=255)                                                                                                cGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAAcc                                                    >  3:39633/1‑149 (MQ=255)                                                                                                cGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTCAACGAGGGCGCCAGGAAAcc                                                    >  8:249643/1‑149 (MQ=255)                                                                                                cGGAACTCGACTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACTGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAAc                                                     <  8:130556/148‑1 (MQ=255)                                                                                                        gCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGc                                            >  6:258729/1‑149 (MQ=255)                                                                                                          cTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGa                                          >  1:157194/1‑149 (MQ=255)                                                                                                           ttCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAg                                                          <  1:165824/132‑1 (MQ=255)                                                                                                           ttCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAg                                                          <  5:219791/132‑1 (MQ=255)                                                                                                           ttCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAg                                                          >  6:219791/1‑132 (MQ=255)                                                                                                           ttCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAg                                                          >  2:165824/1‑132 (MQ=255)                                                                                                               aTCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGgtc                                     <  8:44496/149‑1 (MQ=255)                                                                                                               aTCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGgtc                                     <  2:283112/149‑1 (MQ=255)                                                                                                                tCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGaa                                                                                                                        >  1:17578/1‑67 (MQ=255)                                                                                                                tCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGaa                                                                                                                        <  2:17578/67‑1 (MQ=255)                                                                                                                tCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGgtcg                                    >  6:23574/1‑149 (MQ=255)                                                                                                                tCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGgtcg                                    >  4:291334/1‑149 (MQ=255)                                                                                                                tCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTCGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGgtcg                                    >  5:353441/1‑149 (MQ=255)                                                                                                                  agcagGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGgtcgt                                   <  4:39633/148‑1 (MQ=255)                                                                                                                  agcagGCCGCGCGTGGCCATGGAACGCGGGCACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGCACGGCGTGACCAGCATGAAGCCGGT‑‑GGCGCTGCTGGTGCTGAACGAGCGCGGCAGGAAACCGGACTGGCGACGgtcgt                                   <  4:111338/148‑1 (MQ=255)                                                                                                                    cagGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCaa                                <  1:88128/149‑1 (MQ=255)                                                                                                                         cgcgCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCggg                           <  1:318636/149‑1 (MQ=255)                                                                                                                         cgcgCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCggg                           <  7:344182/149‑1 (MQ=255)                                                                                                                           cgcTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGaa                         <  5:209465/149‑1 (MQ=255)                                                                                                                                 gCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGAt                   >  4:88924/1‑149 (MQ=255)                                                                                                                                 gCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGAt                   <  7:315014/149‑1 (MQ=255)                                                                                                                                   cATGTAACGCGGGTACAACgtggcgtcgtagttaggcgccaggttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacaccttccagcgaaggccagttcggcggcgcctacttgaacgac                    >  6:332953‑M1/1‑19 (MQ=255)                                                                                                                                        aaCGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGgt            >  2:55428/1‑149 (MQ=255)                                                                                                                                         aCGCGGGTACTCCGTGTCGTCGTAGTTATGCGGCAGGGTGAAGTAGTACGGCGGGACCAGCTTGACGCCGCT‑‑GTGGATGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGGGACGGTCGTCAATCGGGAAGTAGATGTACGgtg           <  4:198596/149‑1 (MQ=255)                                                                                                                                         aCGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGgtg           <  5:23574/149‑1 (MQ=255)                                                                                                                                            cgGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGGTGtat        <  5:138641/149‑1 (MQ=255)                                                                                                                                               gTACAACGTGGCGTCGTAGTTAGGCGCCAGgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacaccttccagcgaaggccagttcggcggcgcctacttgaacgacaagaacgacgacc       <  5:18641‑M2/149‑120 (MQ=255)                                                                                                                                               gTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGGTGTATAg      >  8:172617/1‑148 (MQ=255)                                                                                                                                                 aCAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGTGAGGCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGGTGTATAg      >  1:310940/1‑148 (MQ=255)                                                                                                                                                   aaCctggcgcctaactacgacgccacgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacaccttccagcgaaggccagttcggcggcgcctacttgaacgacaagaacgacgaccgca    >  8:191039‑M1/1‑3 (MQ=255)                                                                                                                                                   aaCctggcgcctaactacgacgccacgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacaccttccagcgaaggcca                                             <  3:83974‑M1/107‑105 (MQ=255)                                                                                                                                                   aaCctggcgcctaactacgacgccacgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacaccttccagcgaaggcca                                             >  4:83974‑M1/1‑3 (MQ=255)                                                                                                                                                   aaCGTGGCGTCGTAGTTAGGCGCCAGgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacacctt                                                          >  6:96829‑M2/1‑26 (MQ=255)                                                                                                                                                   aaCGTGGCGTCGTAGTTAGGCGCCAGgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacacctt                                                          <  5:96829‑M2/94‑69 (MQ=255)                                                                                                                                                    aCctggcgcctaactacgacgccacgttgtacccgcgttacatggccaagcgcggcctgctgatggaaggcgagttccgctacctgacaccttccagcgaaggccagttcggcggcgcctacttgaacgacaagaacgacgaccgcaaa  <  6:85189‑M1/149‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCTGATCTTTGTAATCAGTCTGATCTTTGCGGTCGTCGTTCTTGTCGTTCAAGTAGGCGCCGCCGAACTGGCCTTCGCTGGAAGGTGTCAGGTAGCGGAACTCGCCTTCCATCAGCAGGCCGCGCTTGGCCATGTAACGCGGGTACAACGTGGCGTCGTAGTTAGGCGCCAGGTTGAAGTAGTACGGCGTGACCAGCATGAAGCCGGT‑‑GTCGCTGCTGGTGCTGAACGAGGGCGGCAGGAAACCGGACTGGCGACGGTCGTCAATCGGGAAGTAGATGTACGGTGTATAGAACA  >  NC_002947/491232‑491525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.